Pseudomonas lijiangensis: KQP88_03860
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Entry
KQP88_03860 CDS
T08713
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
plij
Pseudomonas lijiangensis
Pathway
plij03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plij00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQP88_03860 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plij03019
]
KQP88_03860 (pnp)
03016 Transfer RNA biogenesis [BR:
plij03016
]
KQP88_03860 (pnp)
Enzymes [BR:
plij01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KQP88_03860 (pnp)
Messenger RNA biogenesis [BR:
plij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KQP88_03860 (pnp)
Transfer RNA biogenesis [BR:
plij03016
]
Prokaryotic type
tRNA degradation factors
KQP88_03860 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
S1_RRP5
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
QWU83935
UniProt:
A0ABX8HU99
LinkDB
All DBs
Position
882673..884778
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADASKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPVGAARVAFHESTGYLLNPTYEQLQASSLDMVV
AGTSEAVLMVESEAKELTEDQMLGAVLFAHDEFQVVINAVKELAAEAAKPLWSWQPKPEA
TELLGAIRSEFGDAISQAYTITVKADRYARLGELRDQVVAKLAVEEGSPSAGEVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPETD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGGKFAVLT
DILGDEDHLGDMDFKVAGTSKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGEEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaagaaatttcagttcggtcaatcgaccgtaaccctggagactggc
cgcatcgcccgtcaggcttccggcgcagtactggtcaccgttgacgacgacgtcagcgta
ttggtgacagtggtcggtgccaaacaggccgatgccagcaaaggcttcttcccgctgtcc
gtgcactaccaggaaaaaacctacgctgccggcaagatccctggtggtttcttcaagcgt
gaaggccgtccttccgagaaagaaaccctgacttcgcgtctgatcgaccgtccgatccgt
ccgttgtttccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtggtttccacc
agcaagaaaaccgatccggacatcgctgcgatgatcggtacttcggctgccctggccatc
tccggcattccgttcgacggtcctgtcggcgctgcccgtgttgctttccacgaaagcacc
ggctacctgctgaacccgacttacgagcagttgcaggcttcgagcctggacatggtcgta
gccggtacttccgaagctgttctgatggttgaatccgaagccaaggaactgaccgaagac
cagatgctgggcgccgttctgttcgcccacgacgaattccaggtcgtgatcaacgcagtc
aaggaactggccgccgaagccgccaagcctctctggagctggcagccaaagccggaagcc
accgagctgctgggcgcgatccgttccgagttcggcgacgcgatctcccaggcctacacc
atcaccgtcaaggccgaccgctatgcgcgtctgggcgagctgcgtgatcaggtcgttgcc
aagctggctgtcgaagaaggcagcccgtctgccggcgaagtcaaagcagctttcggtgaa
atcgaataccgcaccgtgcgtgagaacatcgtcaacggcaagccacgtatcgatggccgt
gacacccgcaccgttcgtcctctgaacatcgaagtcggcgttctgccaaagactcacggt
tcggcactgttcacccgtggcgaaacccaggctctggttgtcgcgactctgggtactgcc
cgtgacgcacagctgctggacaccctcgaaggcgagaagaaagaccccttcatgctgcac
tacaacttccctccgttctcggtaggcgagtgtggtcgcatgggtggtgctggtcgtcgt
gaaatcggccacggccgtctggctcgtcgcagcgttcaggccatgctgcctgaaaccgac
gtgttcccgtacaccatccgtgtcgtatcggaaatcaccgagtccaacggttccagctcc
atggcttcggtctgcggtgcttccctggctctgatggacgccggtgtaccgatgaaggca
cctgttgccggtatcgccatgggtctggtcaaggaaggcggcaagttcgccgttctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaagtagccggtacctcc
aaaggtgttaccgcgctgcagatggacatcaagatcaaaggcatcaccgaagaaatcatg
gagatcgccctgggccaggccctggaagctcgcctgaacatcctcggccagatgaaccag
atcattggtcagtcgcgtaccgagctgtcggccaacgctccgaccatgatcgcgatgaag
atcgacaccgacaagatccgtgacgtcatcggtaaaggcggcgcgaccatccgtgcaatc
tgtgaagagaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagcggctgaagcagcacgtcagcgcgttctgggtatcactgctgaagcg
gaaatcggcaagatctacgtcggcaaggttgagcgtatcgtcgatttcggcgcattcgtg
aacatcctgccaggcaaggacggtctggttcacatctccatgctgagcgatgctcgtgta
gagaaagtgaccgacatcctgaaagaaggtgaggaagtcgaagttctggtactggacgtg
gataaccgcggccgtatcaagctgtcgatcaaggacgtagccgctgcaaaagcgtcgggc
gtctga
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integrated database retrieval system
