Pseudomonas lijiangensis: KQP88_05820
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Entry
KQP88_05820 CDS
T08713
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
plij
Pseudomonas lijiangensis
Pathway
plij03410
Base excision repair
plij03430
Mismatch repair
plij03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
plij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KQP88_05820 (recJ)
03430 Mismatch repair
KQP88_05820 (recJ)
03440 Homologous recombination
KQP88_05820 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plij03400
]
KQP88_05820 (recJ)
DNA repair and recombination proteins [BR:
plij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KQP88_05820 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KQP88_05820 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KQP88_05820 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QWU84296
UniProt:
A0ABX8HXZ9
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All DBs
Position
1329294..1331009
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AA seq
571 aa
AA seq
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MRIEPRLLPDTLPFLGDLPPLLTRLYAARGVMSEAELDKGLARLIPYQQLKGIDAAVELL
VTALQERQRILIVGDFDADGATASTVGVLGLRLFGAAHVDYLVPNRFEYGYGLTPEIVEV
ALQRDPQLLVTVDNGISSVEGVAAAKAAGLSVLVTDHHLPGHELPQADAIVNPNQPGCTF
PSKSLAGVGVIFYVLMALRARLRAIDWFNSQQRAEPNLGDLLDLVALGSVADVVPLDANN
RILVHQGLMRIRAGRARPGLRAILEVARREPSRITSTDLGFILGPRLNAAGRLDDMSLGI
ECLLCDDPVLAREMAVQLDELNQDRKSIEQGMQREALAQLKDLPVESMPFGLCLFEPDWH
QGVIGILASRLKERYHRPTIAFASAGEGVLKGSARSVQGFHIRDALDAVAARHPQLISKF
GGHAMAAGLSLPEENFPMFAEAFDLEVRRQLSEEDLTGRLLSDGTLAVEEFHLELARALR
NAGPWGQHFPEPLFHGVFQLVEQRVVGERHLKMVLRTECGSVKLDGIAFGVDRDIWPNPN
IRWVELAYKLDLNEFRGNETVQLMVTHIAPR
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgaaccccgtctgttgcccgatacactgccttttcttggcgacctgccgccc
ttgctcacccggctgtacgccgcacggggcgtgatgtccgaggctgaactggacaaaggg
ctggcacgcttgatcccgtatcagcaactcaagggcatcgatgcggcagtagagttgctg
gtgacagcgttgcaggagcgccagcgtattctgatcgtcggggatttcgatgccgacggt
gcgacggccagtacggtcggagtgctggggctgcgcctgtttggcgctgcgcatgtggat
tatctggttcccaaccgtttcgagtacggctatggcctgaccccggaaatcgtcgaagta
gccttgcaacgcgatcctcaattgctggtcactgtggataacggcatttccagcgtcgaa
ggcgtggcggcggccaaggcggcggggctgagtgtgctggtgaccgatcaccacttgccg
ggccatgaactgccgcaagctgacgccatcgtcaacccgaaccagcccggctgtacgttc
cccagcaagtcactggcaggtgtcggggtcatcttctacgtgctgatggcccttcgagca
cgtttgcgggccatcgactggttcaacagccagcaacgtgccgagcccaatctgggcgat
ctgcttgatcttgtggctttgggcagcgtggccgacgttgtaccgctggacgccaataac
cgcattctggtgcatcagggcctgatgcggattcgcgccggtcgtgcccggccggggttg
cgggccatccttgaagtggcgcgtcgtgaaccttcgcgcatcacctccaccgatctgggc
ttcatccttggcccacggctgaatgcggcgggtcgtctggatgacatgagcctggggatc
gaatgcctgctgtgcgatgacccggtcctggcccgggaaatggcggtgcaactggatgag
ctgaatcaggatcgcaaatccatcgagcaaggcatgcagcgcgaggcactggcccagctc
aaggacttgccggtggagtccatgccgttcgggttatgcctgttcgagcccgattggcac
cagggcgtcatcggcattcttgcctcgcgcctgaaagagcgttaccaccgcccgaccatt
gccttcgccagtgcaggggagggcgtgttgaaaggctcggctcgctcggtacaaggcttt
catattcgcgatgcgctggacgccgttgccgctcgtcacccgcaactgatcagcaagttc
ggtgggcacgccatggccgcaggcctgtccctgccggaagagaactttccgatgtttgcc
gaagccttcgacctggaggtgcgtcgtcagctcagcgaagaagaccttaccgggcggttg
ctctcggacggtacgctggcagtcgaagagtttcatctggagctggcgcgggcactgcgc
aacgccgggccatggggtcagcatttccccgagccgctgtttcatggcgtcttccagctg
gtcgagcagcgtgtggtcggtgagcggcacttgaaaatggtgctcaggaccgagtgtggc
tcggtaaagctggatggcatcgctttcggcgttgatcgcgacatctggcccaatcccaac
atccgctgggtcgaactggcttacaaactggacctcaacgagtttcgcggcaatgaaacg
gtgcagttgatggtgacccacatagcaccccgctga
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