KEGG   Pseudomonas lijiangensis: KQP88_11540
Entry
KQP88_11540       CDS       T08713                                 
Name
(GenBank) sigma 54-interacting transcriptional regulator
  KO
K11914  sigma-54 dependent transcriptional regulator
Organism
plij  Pseudomonas lijiangensis
Brite
KEGG Orthology (KO) [BR:plij00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:plij03000]
    KQP88_11540
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:plij02044]
    KQP88_11540
Transcription factors [BR:plij03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    KQP88_11540
Secretion system [BR:plij02044]
 Type VI secretion system
  Imp/Vas secretion system related proteins
   KQP88_11540
SSDB
Motif
Pfam: Sigma54_activat Sigma54_activ_2 HTH_8 GAF AAA_5 GAF_2 AAA_16 HTH_30 HTH_50 AAA_2 AAA_7 AAA TIP49 AAA_22 nSTAND3
Other DBs
NCBI-ProteinID: QWU85616
LinkDB
Position
2652500..2654005
AA seq 501 aa
MFNSIEEPFGYVQKLCAQYTRLSHLCDSERLLQEFALAAAELTDCELGRLYLLDATHTRL
QLCAEAREGVIIPMSPASLEADCKGEQLLQFCLCQNQIVSVSELSAGIYDTGFLPTHEQA
WKSLLCVPLVDQQQRVAGLLLCAGPNRKVLDGFAESLGELGAFVLSQLQLLQRLQPSASP
LDVKPSRKRYGLIGQSEIMHQTCHLIGKVLQSSYTVLLTGETGTGKEVVARAIHDHGPRR
SRPFVVQNCTAFPEGLLESELFGYCRGAFTGADRDRAGLFDTANGGTLLLDEIGDMPLSL
QAKLLRVLQEGEIRPLGSSETRKVDVRIIAATHRNLLAMVAEGLFREDLYYRLAQFPIEL
PPLRHREGDIAELARHFADKACHFLGRAPVRWSEVALLLLCRRNFPGNVRELKGLVERAV
LLCEGNELLPEHFSFDVKLLVRDTTLNLKERLEQVERCVLLDSLRKSGGNRSLAARQLGL
ARRTLLYRMSHLNIKRDELHA
NT seq 1506 nt   +upstreamnt  +downstreamnt
atgttcaactcaattgaagagcctttcggctatgtccagaaactctgtgctcaatacacc
cgtctttcgcacctctgcgacagcgagaggctgttgcaggagtttgcacttgctgccgca
gaactgactgattgcgagctgggccgcttatatctgctggatgctacccacacccgtttg
cagttgtgtgcagaagcccgggaaggcgtaatcattccgatgagccctgcaagccttgaa
gcggattgcaagggtgagcagctattgcagttctgtctctgccagaaccagattgtcagt
gtgagtgaactcagtgccgggatctatgacaccggtttcttgccgacccatgaacaagcc
tggaaatcgttgttgtgtgtcccactggtggatcagcaacagagagttgccggtctgttg
ttgtgcgccgggccgaatcgcaaggtgctcgatggctttgccgagtctctgggcgaactc
ggtgcatttgtactttcgcaactgcaactgctgcagcgtctgcaaccttccgccagtcct
cttgacgtgaagccttcccggaaacggtacggcctgatcggccagagcgagatcatgcac
cagacctgccacttgatcggcaaggtgctgcaaagctcatacacggtcttgctgaccggt
gagacgggtacgggcaaggaagtggtggctcgtgccattcacgatcacgggcctcgccgc
tccaggccctttgtcgtgcagaactgcacggctttccctgaaggacttctggaaagcgag
ttgttcggttattgcagaggtgcatttaccggtgctgatcgtgaccgggctggtctgttc
gataccgccaatggcggcacgttattgctggacgagattggcgatatgccgctgtccttg
caggcaaagctcttgagggtcttgcaggaaggggagattcgcccgttgggttcaagtgag
acccgcaaggtcgatgtgcgaatcatcgctgcaacccaccgcaatctcctggctatggtt
gccgaagggttgttcagggaagacctttactatcggcttgcccagtttccaatcgagttg
ccgccattgcgtcatcgtgaaggagacattgcggaactggctcggcattttgccgacaag
gcttgtcactttcttggtcgtgcgcctgttcgatggtctgaagtggcgcttctgctgctg
tgtcgacgtaactttcccggcaatgtccgcgaactgaaagggcttgtagagcgtgccgtt
ctgttatgtgaagggaacgaactgttacctgaacacttttcttttgatgtaaagctattg
gttcgtgataccacgcttaatcttaaagagcgccttgaacaagtcgaacgctgtgtattg
cttgattccttgagaaagagtggcggcaatcgcagtcttgccgcacgtcaattggggttg
gcacgtcgtactctgctttatcgcatgtctcatttgaatatcaaacgtgatgagcttcat
gcctga

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