Pseudomonas lijiangensis: KQP88_12375
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Entry
KQP88_12375 CDS
T08713
Symbol
tssM
Name
(GenBank) type VI secretion system membrane subunit TssM
KO
K11891
type VI secretion system protein ImpL
Organism
plij
Pseudomonas lijiangensis
Pathway
plij02025
Biofilm formation - Pseudomonas aeruginosa
plij03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
plij00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
KQP88_12375 (tssM)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
KQP88_12375 (tssM)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
plij02044
]
KQP88_12375 (tssM)
Secretion system [BR:
plij02044
]
Type VI secretion system
Imp/Vas secretion system core components
KQP88_12375 (tssM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IcmF-related_N
IcmF-related
IcmF_C
IcmF_helical
AAA_29
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
QWU85506
UniProt:
A0ABX8HXX4
LinkDB
All DBs
Position
complement(2934539..2938066)
Genome browser
AA seq
1175 aa
AA seq
DB search
MKNFFKKVGAFLRKTWVWTLLLVLFVALLVWFVGPLLAVNDYKFWEGSTSRLLTISVLFL
IWGLTMVFVSWRAGVRKKAMEESEDGQDRLRREEQIDEEQKELKARFKDALKTLKTSSLY
RGRSERWRSDLPWYLLIGPQGSGKTSLLDFSGLEFPINKIERKLTRDTLGTRHCDWYFAD
HGVLIDTAGRYLTQPDAEVDGSAWSTLLDLLRKRRRNRPLNGVLVTIPVETLLQGSEQQL
ETLARQVRGRLQDVHQKLHVDVPVYLVLSKADSLLGFDEFFDQLTREESDQVLGTSFRKE
QVGTDVAVLRNEFEELLRRLNSQVIMRMHQERDTQRRGRILDFPHQLGQIGERLCLFVDM
AFTGNRYQRASQLRGFYLTSAPHLTAEMDATTAGIGANLGLNAGILPTLRSGRSRFIHHL
LSRVIFPEADLAGLDKRERSRIHWGQRALYVGALAALALFGLLWASGFSANYERLENLRN
LAQTWTQQRSALSTRDDAMAALKTLDTSYAATQVFPAKGDVSYHERGGLYQGEAVNPVVK
DAYDRQLEQQLLPRVATLLEGQVRANTKDRDRLLNSLRAYLMLNMKDRRDEQWLKDWVAT
EWSQRYSGNTAVQNGLNSHFERLLKQPFVYPLDEQLVAQARQILRSESLANVVYRMLREQ
ARNLPEYRLDQHLGPQGSLFVGTDYVIPGFYTQQGYQQYFSVQGSMLVSDILRDNWVLGE
GSGLSSMDLRRLMVELEQLYFRDYANYWGEAVGQVQLPAINDFGEGAEQLAGLTSANSPV
IQMLVEVRENTRFPVVAETAEEAAAAAAQLADKGGKLGKVAAAAAGNASDALAKKLPDTA
RKSLQSRFEPLHRLLDDNNGPTADLTPALAALNELQMQMASLARSSSPDQAAFELAKNRM
GGQRDALSNLRTVSSRLPRPVGVWFNVLAEDTWRLVLRDSYQYLNQRYQNELYSFYGKAI
NQRYPFNAHSASDVAISDFREFFKAQGIADRFFDSYMRPFVSGDPGNYRMRTVDGYSLPV
SKVYLDQMASALVIRQSFFADNPAEPQVQFKLEPYTLDPAVSRSEFKLGDKTIEYRHGPI
VPVSFKWPTDAEDGRTSLVLDRMVGRPLGIEKNTGPWSLFRLFDLMQTEYLTGRDVLVLK
ADVGGLRANYLLTSQRTPNPFDMGVLRTFRMPVQL
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaagaattttttcaagaaagtcggcgcattcctgcgcaagacatgggtctggacgctg
ctgctggtactgtttgtcgcgttgctggtgtggttcgtggggccgctgctggcggtcaat
gactacaagttctgggaaggctcgacctcccgcctgctgaccatcagcgtgctgttcctg
atctggggcctgaccatggtcttcgtcagctggcgcgccggtgttcgcaagaaagcgatg
gaagagagcgaagacggccaggatcgtctccgccgcgaagagcagatcgacgaagaacag
aaggagttgaaagcgcgtttcaaggatgcgctcaagaccctgaagacgtcgagcctgtat
cgtggccgtagcgagcgctggcgcagtgacttgccctggtacttgctgatcggaccgcag
ggcagtggcaagaccagcctgctggacttctcgggtcttgagttcccgatcaacaagatc
gagcgcaagctgacccgcgacaccctgggcacccgccactgcgactggtacttcgctgat
catggcgtgctgatcgacaccgctggccgctacctgacccagccggatgccgaagtcgat
ggcagtgcctggagcactttgcttgacctgctgcgcaagcgtcgtcgcaatcgtccgttg
aacggcgtgctggtgaccattccggtggaaaccctgctgcagggcagcgaacagcaactc
gaaaccctggcccgtcaggtgcgtggacgcctgcaggacgtgcatcagaaactgcacgtg
gacgtgccggtttatctggtgctgagcaaggctgacagcctgctgggcttcgatgagttc
ttcgatcaactgactcgcgaagaaagcgatcaggtgctgggtaccagcttccgcaaagag
caagtcggcaccgatgtggctgtgctgcgcaacgagttcgaagaactgctgcgtcgcctc
aatagccaggtgatcatgcgcatgcaccaggagcgtgacacccagcgtcgtggccgtatc
ctcgacttcccgcatcaactgggtcagatcggcgagcgtctgtgcctgttcgtcgacatg
gcattcactggcaaccgctaccagcgtgccagccagttgcgcggtttctacctgaccagc
gcgccgcacctgactgcggaaatggacgccaccactgcgggtatcggcgccaacctgggt
ctgaacgctggcatcttgccaaccctgcgcagtggccgttcgcgcttcattcaccacttg
ctcagccgggtgatttttcccgaggccgatcttgcgggtctggacaaacgcgagcgcagc
cgcatccattggggccagcgtgcgctgtacgtaggcgcgctggcagcacttgcgctgttc
ggcctgctttgggccagcggtttctctgccaactatgagcgtctggaaaacctgcgcaac
ctggctcagacctggacccagcaacgttcggcgctgagcacccgcgatgacgccatggcg
gcactcaagaccctggacaccagctacgccgctacccaggtgttccctgcaaaaggcgac
gtgagttaccacgagcgcggcggtctgtatcagggcgaagccgtcaacccggtcgtcaag
gacgcttacgatcgtcagcttgaacagcaactgttgccacgggtcgcaaccctgctggaa
gggcaggtgcgtgccaacaccaaggaccgcgatcgcctgctcaacagcctgcgtgcgtac
ctgatgctgaacatgaaggaccgtcgcgacgagcaatggctcaaggactgggtcgcgaca
gaatggtcccagcgttacagcggcaacactgccgtacagaacggcttgaacagccacttc
gagcgcttgctcaagcagccgttcgtttatccgctggacgagcaactggtggctcaggcg
cgtcagattctgcgcagcgagtccctggccaacgtggtctaccggatgctgcgcgagcag
gctcgcaacttgccggaataccgtctggatcaacacctgggcccgcaaggctcgctgttt
gtcggcaccgactatgtgattccgggcttctacacccaacagggttaccagcagtacttc
tcggtgcagggctcgatgctggtcagcgatatcctgcgtgacaactgggtactgggcgaa
ggctctggccttagcagcatggacttgcgtcgcctgatggttgagctggagcaactgtat
ttccgtgactacgccaactattggggcgaagcggtaggccaggtgcaactgccggccatc
aacgactttggcgagggtgccgagcaactggcaggcctgacgtcagccaactcaccggtc
atccagatgctggtcgaagtgcgtgaaaacacccgcttcccggtggtcgcggaaacggca
gaggaagccgctgcagctgccgcgcaactggccgacaagggcgggaaactcggcaaggtg
gcagccgctgctgctggcaatgcgtctgatgctctggcgaaaaagctgccggatactgcg
cgtaaatccctgcaaagccgcttcgaaccgctgcaccgtttgctggacgacaacaacggc
ccgaccgctgacctgacgccagccctggcagccctcaacgaactgcaaatgcagatggcc
agcctggcgcgctccagctcgccggatcaggctgcgttcgaactggccaagaaccgcatg
ggtggccagcgtgatgcgctgagcaacctgcgcactgtatccagccgtctgccgcgtccg
gtgggcgtgtggttcaacgtcctggctgaagacacctggcgcctggtgctgcgtgattcc
tatcagtacctgaaccagcgttatcagaacgagctgtacagcttctacggcaaggcgatc
aatcagcgttatccgttcaacgcacacagcgccagcgacgtggcaatcagcgacttccgt
gagttcttcaaggctcagggtattgcggatcgcttcttcgacagctacatgcgtccattc
gtcagtggcgatccgggtaactaccgcatgcgcactgtcgacggttacagcctgccggtt
tccaaggtctacctcgaccagatggcgtctgcgctggttatccgccagagcttcttcgcc
gataacccggccgagccgcaagtgcagttcaagctggagccttacaccctggacccggca
gtcagccgttccgagttcaagctgggcgacaagaccatcgaatatcgccatggtccgatc
gtgccggtgtcgttcaagtggccgaccgatgccgaagacggccgcaccagcctggtactc
gacagaatggtcggtcgcccgctgggtatcgagaagaacacgggaccatggtcgctgttc
cgtctgttcgacctgatgcagaccgaatacctgacagggcgtgacgtgctggtgctcaag
gccgacgtgggtggcctgcgcgccaactacctgctgaccagccagcgcacgccgaacccg
ttcgacatgggcgtgctgcgtaccttccgcatgccggtgcagctctga
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