KEGG   Pseudomonas lijiangensis: KQP88_12405
Entry
KQP88_12405       CDS       T08713                                 
Name
(GenBank) sigma 54-interacting transcriptional regulator
  KO
K11914  sigma-54 dependent transcriptional regulator
Organism
plij  Pseudomonas lijiangensis
Brite
KEGG Orthology (KO) [BR:plij00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:plij03000]
    KQP88_12405
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:plij02044]
    KQP88_12405
Transcription factors [BR:plij03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    KQP88_12405
Secretion system [BR:plij02044]
 Type VI secretion system
  Imp/Vas secretion system related proteins
   KQP88_12405
SSDB
Motif
Pfam: Sigma54_activat Sigma54_activ_2 HTH_8 AAA_5 HTH_30 AAA_2 GAF_3 GAF GAF_2 AAA_16 HTH_50 AAA_7
Other DBs
NCBI-ProteinID: QWU80894
LinkDB
Position
complement(2942243..2943760)
AA seq 505 aa
MFTQVPQPLAYAEALLAQYAELSRAASGADLLGGFVRGLAGLSGCELTQLYLLDATNTCL
GMNAECLDGVLQPREAASLPVDYSDEQLLQFALSQNRVLFLSELSGSLHETSFLPAQATP
WQSLLCVPMVTHQKSVEGVLLCASRRHVDLQGFADSLGQLGSFVLGQLHLMQRLRQPMNE
LPVASARVPSASDYGLIGKSASMRRTYSMISKVLHSPYTVLLRGETGTGKEVVARAIHDF
GPRHSKAFIVQNCAAFPENLLESELFGYRKGAFTGADFDREGLFDAANGGTLLLDEIGDM
PLALQAKLLRVLQEGEIRPLGSNETHKIDVRIIAATHRDLSVMVSEGTFREDLYYRLAQF
PIELPALRQREGDIVDLARHFADKTCAFLQRDPLRWSDSALTHLSSYAFPGNVRELKGLV
ERAVLLCEGGELLAEHFSLRTEAIPLDSSLNLRERLEQVERCMLLDCLRKNDGNQTLSAR
ELGLPRRTLLYRLERLNINLGDFNG
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgttcactcaggtgcctcagccactggcctatgccgaagcgttgcttgcgcagtacgct
gaactgtcgcgagcggccagcggtgccgatctgctgggtggctttgtgcgcgggctggcc
gggctcagcggttgcgagctgactcagctctacctgctggatgccaccaacacctgcctt
ggcatgaatgccgagtgccttgatggcgtcctgcaaccccgggaagcggcgagcttgccg
gtggattacagtgacgaacagttgctgcagttcgccctgagccagaatcgtgtgctgttc
ctcagcgaactgagcggcagcctgcatgaaaccagcttcctgccggcacaggccacgccc
tggcagtcgctgctgtgtgtcccgatggtcacccatcagaagtccgtagaaggcgtgttg
ttgtgcgcaagccgtcggcatgtcgacctgcaaggttttgccgactcactcggacagctt
ggctcgtttgtacttggccagttgcatctgatgcagcgcctgcgccagcccatgaatgag
ctgcccgttgcatcggcccgcgtgcccagtgccagcgattacggactgatcggtaaaagc
gcaagcatgcgccgtacctattcgatgatcagcaaagtcctgcacagcccttataccgtg
ctgttgcgcggcgagacgggcaccggcaaggaagtggtcgcacgggcgattcatgacttc
ggaccgcgccattcgaaggcattcatcgtgcagaactgtgcggcgttccctgaaaacctg
ctcgaaagcgagttgttcggctatcgcaagggtgcattcaccggtgctgactttgaccgt
gaagggcttttcgacgctgccaatggcggcaccctgttgctcgacgaaatcggcgacatg
ccattggccctgcaagccaagctgctgcgcgtcctgcaggaaggcgagattcgtccgctg
ggttccaacgagactcacaagatcgacgtgcgcatcattgccgccacacaccgggatctg
tcggtgatggtcagtgaaggcacgttccgcgaggacttgtactaccgccttgcgcagttc
cctatcgaactgccggccttgcgtcagcgcgaaggcgacattgtcgacctggctcggcac
tttgccgacaagacctgtgcattcctgcagcgtgacccgttgcgctggtcggattcggca
ctgactcacctgtccagctatgccttccccggcaacgttcgcgagctcaagggcctggtc
gaacgtgccgtgctgctgtgcgagggcggtgagttgctggccgagcacttttccctgcgc
acagaagccatcccactggacagcagcctcaatctgcgcgagcgactggaacaggtagaa
cgctgcatgctcctcgattgcctgcgcaagaacgatggcaaccagacgctttccgcgcgc
gaactcggtctgccgagacgcacactgctttaccgccttgagcgcctgaatatcaatctg
ggtgatttcaatgggtag

DBGET integrated database retrieval system