Pseudomonas lijiangensis: KQP88_17635
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Entry
KQP88_17635 CDS
T08713
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plij
Pseudomonas lijiangensis
Pathway
plij03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plij00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQP88_17635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plij03019
]
KQP88_17635
03009 Ribosome biogenesis [BR:
plij03009
]
KQP88_17635
Enzymes [BR:
plij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KQP88_17635
Messenger RNA biogenesis [BR:
plij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KQP88_17635
Ribosome biogenesis [BR:
plij03009
]
Prokaryotic type
rRNA helicases
KQP88_17635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
QWU81855
UniProt:
A0ABX8HMM5
LinkDB
All DBs
Position
complement(4250188..4251858)
Genome browser
AA seq
556 aa
AA seq
DB search
MTQEIGGFAALDLHPSIVAAVIATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPES
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVVEVRLPDSQAVLDARIKKLTNSLSPLVADAEASHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLSAIERERPLVPNNAPRADRGERSDRGDRPERERRAPMPLAEGRA
RCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLKD
TRVAGKQLKLRRYRED
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctctcgaccttcatccgagtattgttgcagcc
gtcatcgcgaccggctacgaagagccttcggccattcagcagcaatccatcccgattatt
cttgccggccacgacatgatcggccaggcgcagaccggtaccggtaaaaccgccgcgttc
gccctgccaatcctgcatcgtatcgatccgagcaagcgtgagccgcaagccctgattctc
gctccaacccgcgagctggcactgcaggttgccaccgcgtttgaaacctacgccaagcag
atgccaggcgttaccgtcgttgccgtctacggtggcgcacccatgggcccacagctcaag
gccatccgcaatggcgcacagatcgttgtcgccaccccgggtcgtctgtgcgatcacctg
cgccgtgacgaaaaagtcctggctaccgtgaaccacctggttctcgacgaagcggacgaa
atgctcaagctgggcttcatggatgacctggaagtcatcttcaaggccatgccggaaagc
cgtcagaccgttctgttctcggctaccctgccgcagtcgatccgtgccatcgccgaacgc
catctgcgcgatccgaagcacgtcaagatccagaccaagacccagaccgttaccgcgatc
gagcaggctcacctgctggttcacgctgaccagaaaacctctgccgtactgagcctgctg
gaagtcgaggatttcgacgccctgatcatgttcgtacgtaccaagcaggcgaccctggat
ctggcaagcgccctggaagccaaaggctacaaggctgctgcactgaacggcgatatcgcc
cagaaccagcgtgagcgcgtcatcgactccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgcccgtggtctcgacgttccgcgcatcactcacgtgttcaacgtt
gacatgccttacgatcctgagtcctacgttcaccgtatcggccgtactggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgtgtaactggtcagaaagtcgtggaagtccgcctgccggattcccaggccgtcctg
gatgcccgcatcaagaaactgaccaacagcctgtcgccgctggttgccgatgcagaagcg
agccatggcgatctgctcgatcgtctgactgccgatatcggctgcacgccgcgtgccctg
gctgcggccctgctgcgcaaggccaccaatggtcaggctctgaccttgtctgccatcgag
cgtgagcgtccactggttccgaacaacgctccgcgtgctgatcgtggcgagcgtagcgat
cgcggtgaccgtcctgagcgcgagcgtcgtgctccgatgccactggccgaaggtcgtgct
cgttgccgtaccgcgctgggtgcgcgtgatggtatcgctgcgaagaacctgctgggtgca
atcctcaacgaaggcggcctggcccgcgaagcaatcggccgtatccaggttcgtgacagc
ttcagcctggtcgaactgccggaagatggccttgagcgtctgctgaccaagctcaaggac
acccgcgttgctggcaagcagttgaagctgcgtcgctatcgcgaagactga
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