Pseudomonas lijiangensis: KQP88_21095
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Entry
KQP88_21095 CDS
T08713
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
plij
Pseudomonas lijiangensis
Brite
KEGG Orthology (KO) [BR:
plij00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plij03019
]
KQP88_21095 (hrpB)
Enzymes [BR:
plij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KQP88_21095 (hrpB)
Messenger RNA biogenesis [BR:
plij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KQP88_21095 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
ResIII
AAA_30
Cas3-like_C_2
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QWU82495
LinkDB
All DBs
Position
complement(5026921..5029455)
Genome browser
AA seq
844 aa
AA seq
DB search
MISLPIDAVLPALRQALTSRHEAILEAPPGAGKTTRVPLAMLDEPWLAGQTILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALEGVGL
LIFDEFHERSLDADLALALSLNGRDLFRDEQPLKILLMSATLEGERLSALLDDAPVVRSE
GRMFPVSLQWGRPFQPGEFIEPRVVQTVLDALGNESGSLLVFLPGHAEIRRVNQQLAEAL
GERADILLCPLHGELDLAAQRAAIEPAPKGSRKVVLATNIAETSLTIDGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAYGSAEILQ
ADLAGLALQLARWGVMPAQLVWLDNPPAAAYAQAQDLLVRLGALSNPQGQERKLTTHGQA
MAQVPAHPRIAHLLLRGHELGLGNLACDVAALLGERDIQRGGGADLHSRLTLLAGSERAA
RGAQGGVQRARQLARQYRGYLKGAPTTPVSDPYHPRWLGCLLALAYPDRVAQQRRAGGAE
YRLANGRAALFAEVDALMKQPWLVIADLGSRQGQREERIYLAAEFDPALFDSVLSEQVIE
FDQLDWDEREGVLRAERQRKVGELILSREPLTGLDESARGQALLGLVRRKGLELLPWTPE
LRQWQARVTLLRQLDLEKQDTSEWPDVRDAALLDSLESWLLPYLGKVTRLSHFGNLDLSS
ILHNLLPWPLPQRLDEQAPHHLSVPSGSSIRLDYSESPPILAVRLQELFGLSDTPRIANG
RQIVKLHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLIAEPTARVK
PRKG
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgatttccttgcccatcgatgctgtcctgccggccctgcgccaggcactgacctcccgc
cacgaagccatcctcgaagccccgcctggcgcgggcaagacgacgcgcgtgccattggca
atgcttgatgaaccgtggctggccgggcaaaccatcctcatgctcgaaccccgccgcctg
gccgccagggccgcagccgagcggttggccagtgagttgggggaaaaggtcggggaaacg
gttggctatcgcattcggctggacagcaaagtcggtcccaatacccgcatcgaggtggtc
accgaagggattctgactcggcgtctgcaggatgatcctgcgctggaaggcgttgggctg
cttattttcgatgagtttcacgagcgcagtctggacgccgatctggcgcttgccctgagc
ctcaacggtcgcgacctgtttcgtgacgagcagccgctgaaaatcctcctgatgtcggcc
actctggaaggcgaacgcctgtccgcgctgctggatgacgcgcctgtcgtgcgcagcgaa
ggacgcatgtttccggtgagcctgcagtgggggcgaccctttcagcccggcgagttcatc
gagccgcgagtggtgcagaccgttctcgatgcactgggtaatgaatccggcagcctgctg
gtgtttctgccggggcatgccgagatccggcgcgtcaatcagcagctggccgaagccctg
ggcgaacgggccgatatcctgctttgcccgttgcacggggaactggaccttgcggcccag
cgtgcggctatcgagcccgcgcccaaaggctcgcgcaaggtcgtattggcgaccaatatc
gcggaaaccagcctgaccatcgatggcgtgcgcgtcgtgatcgatgccggtctggcacgt
gtgccgcgtttcgatccgggcagtggcatgacacgcctggatacccagcgcatctctcgc
gccagcgcgacccagcgtgccggacgggcagggcgtctggagcctggcgtctgttatcga
ctctggtccgaagctcagcatgaccagcttgcagcctatggctcggcggaaatcctccag
gcggatctggccgggctggcgctgcaactggcgcgctggggcgtgatgccggctcaactg
gtgtggctcgataaccctccagcggcggcttatgcacaggcgcaggacctgctggtgcgg
ctgggtgccttgagcaacccgcagggccaggagcgcaaattgaccactcatggtcaggcg
atggcacaagtccctgcgcatcctcgaatcgctcacctgttattgcgcggtcatgaactg
gggcttgggaatctggcctgcgatgtggcggccttgctgggtgagcgggatattcagcgc
ggcgggggagccgacttgcacagccgcctgactttgctggccggaagcgagcgcgctgcc
cgtggtgctcaaggcggtgtgcagcgagccagacaactggcacgtcaatatcgcggttac
ttgaagggcgcgcccacaacaccggtcagcgatccctaccatccgcgctggctgggttgc
ctgctggcgctggcttacccggatcgtgtcgcgcaacaacgccgggcaggcggtgccgaa
tacaggctggccaacgggcgtgcggccctgttcgctgaagtcgatgctttgatgaaacaa
ccctggctggtgattgccgacctgggcagtcgtcagggccagcgggaagagcgaatctat
ctggcagccgagttcgatccggcactgttcgactcggttctctccgaacaggtcatcgag
ttcgaccaactggattgggatgaacgcgaaggcgtgttgcgtgccgagcgtcagcgcaag
gtcggtgaactgatcctcagtcgagaaccgctgaccggtcttgatgagtcagcccgaggc
caggctttgctggggctggtccggcgcaaagggctggaactgctgccatggacccccgaa
cttcgccagtggcaagcccgcgtcaccctgctgcgccaactggaccttgagaaacaggac
accagcgaatggccggacgtccgcgatgccgccttgctcgacagcctggagtcctggctg
ctgccgtacctgggcaaagtcacccggctcagccatttcggcaatctggatctctcgtcg
atcctgcataaccttttgccctggccactgccgcagcgtctggacgaacaggcacctcat
cacttgagcgtaccgtccggctcgtcgatacgcctggattacagcgaatctcccccgatc
ctcgctgttcgcctgcaagaactcttcggtctgtcggacaccccgcgcatcgccaatggc
cgccaaatcgtcaaactgcacctcctgtcccccgcccgccgtccggtgcaagtgacgcaa
gacctggctaacttttggcgcagtacttatgccgaggtcaagaaggatttgaagggaagg
tatccgaagcattattggccggatgatccactgattgctgaaccgactgcgcgggttaag
ccgaggaagggctaa
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