Pseudomonas lijiangensis: KQP88_22875
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Entry
KQP88_22875 CDS
T08713
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
plij
Pseudomonas lijiangensis
Pathway
plij03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plij00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQP88_22875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plij03019
]
KQP88_22875
Enzymes [BR:
plij01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KQP88_22875
Messenger RNA biogenesis [BR:
plij03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KQP88_22875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QWU82801
UniProt:
A0ABX8HQB8
LinkDB
All DBs
Position
5362531..5364423
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AA seq
630 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLL
AHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGDV
RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRTGEAISLVAPDEEKL
LKSIERMTRQKIPDGDLMGFDINAVEAEKPEVRERPDVRNPRAARAPRGEGEKSSNNGGR
RDKGKDKGKEKPAAAAAAPGERPARQPRERKPREGTPREQRHSQPPRPSPDRAPDEFRDD
DVDNFGNRADYVSPYQGKNQGRGRRPGAPAAPGAAPAGAGRPQGSGRPANPRNSGAGGAG
TGAKRNGSGSGSRSGGGGRDGQQRNRRPARDDQSRQEPAVRSSREGQQPQPKIVHKESKI
DRFPSAEQLDQLPSRPRGEKPALLTRNRDS
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tatacccagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagacaggtactggtaaaaccggtggcttcgccctcccgattctg
gagcggttgttccccaacggtcatccggacaaatcccagcgtcatggcccgcgccaaccc
cgcgtactggtcctgaccccaacccgcgaactggctgcccaggtgcatgacagcttcaag
ctgtatgcccgcgacctgaagttcgtcagcgcctgcatcttcggcggtgtcggcatgaac
ccgcaggtccaggccatggcccgtggcgtggacgtgctggtcgcctgccccggccgcctg
ctcgacctggccggacaaggcagcgtcgatctgtcccacgttgaaatcctggtgctcgat
gaagcagaccggatgctcgacatgggcttcgtccacgacgtgaaaaaggtccttgcccgc
ctgccggccaagcgccagaacctgctgttctcggcaacgttctccaacgacatcaccgcc
ctggccggcaagctgctgcacaaccccgagcgcatcgaagtcacgccaccgaacaccacg
gtcgagcgtatcgagcaacgggttttccgcctgcccgccaaccacaagcgttcgctactg
gcgcacctgatcactcagggcgcgtgggaacaggttctggtcttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctcagcgctgtcgcgatccac
ggcaacaagagccagaacgcccgtaccaaagccctggccgacttcaaggccggtgacgta
cggatcatggtcgccaccgatatcgccgcccgcggcctggatatcgaccagttgccacac
gtggtcaacttcgagctgccaaacgtcgatgaagactacgtgcaccgcatcggtcgtacc
ggccgtgcaggccgcaccggcgaggccatctcgctggtcgcgccggacgaagaaaaactg
ctcaaaagcatcgagcgcatgacccgtcagaaaatccctgacggcgacctgatgggtttc
gacatcaatgcagtcgaggcggaaaagcctgaagttcgtgagcgtccggacgtccgcaac
ccacgcgcagcacgtgctccacgtggcgaaggcgaaaagagcagcaacaacggtggtcgt
cgcgacaagggcaaggacaaaggcaaggaaaagccggcagcagctgcagcagcgcctggc
gaacgtccggcacgtcagccgcgtgaaagaaaacctcgcgaaggtacgccacgtgagcag
cgtcactcgcaaccaccacgcccatcgcctgatcgcgcacctgacgagtttcgggatgac
gatgtggataacttcggcaaccgcgctgactatgtaagcccttaccaaggcaagaatcag
ggccgtggccgccgtcccggagcccctgccgctccaggcgcagcacctgctggcgccgga
cgtccgcaaggttcggggcgcccggccaacccacgcaactcgggcgcagggggtgcaggc
accggtgccaagcgcaatggctcgggttccggctcgcgcagtggtggcggaggccgtgac
ggccaacagcgcaatcgccgcccggcacgtgacgatcagtcccgccaggaaccggccgtt
cgcagttcccgtgaaggccagcaacctcagccgaagatcgtgcacaaggaatcgaaaatc
gatcggttcccgtctgccgagcagctcgatcagttgccaagccgcccacgcggtgaaaaa
ccggccttgctgactcgcaaccgcgatagctga
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