Candidatus Planktophila limnetica: PHILAsVB114_01175
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Entry
PHILAsVB114_01175 CDS
T05067
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
plim
Candidatus Planktophila limnetica
Pathway
plim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PHILAsVB114_01175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plim03021
]
PHILAsVB114_01175
03400 DNA repair and recombination proteins [BR:
plim03400
]
PHILAsVB114_01175
Enzymes [BR:
plim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PHILAsVB114_01175
Transcription machinery [BR:
plim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PHILAsVB114_01175
DNA repair and recombination proteins [BR:
plim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PHILAsVB114_01175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ASY27291
UniProt:
A0A249LDV2
LinkDB
All DBs
Position
216639..220451
Genome browser
AA seq
1270 aa
AA seq
DB search
MLDVNFFDELRIGLASADHIREWSFGEVKKPETINYRTLKPEKDGLFDEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITEVDKEAREEDMPQLEKKLANDRKKIETRRDNDLDVRTKKLEAD
IAELESEDAKSDVKRKVRESAERELKGLRDRSERELNRLEDVWTRFKNLKVQDLEGDENL
YREMRDRYGMYFKGDMGAAAIKKRLETFDLETEYKILTDLSENGKGAKKTRAIKRLKVVN
AFMTTSNHPASMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLADL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPANGRPITTPTQDMVLGLYWLTMEREAELGEGR
AFSSVAEAIMAHDQHTVSLQAKVKIRLSTTGQTLSTTVGRALFNEALPADFRFVDVDVTK
KQLGQIVDELAEFYPKVVVAETLDALKSLGFHWASRAGATIGIEDVVTPPRKLEILETYE
TQADKVQSQYEKGLITDDERRQELIEIWTKATAEVGKEMEENFPRVNPVWMMVTSGARGN
MMQIRQIAGMRGLVANPKGEIIPRPIKSNFREGLSVLEYFISTHGARKGLADTALRTADS
GYLTRRLCDVAQDVIIREEDCGTDRGLVLPIASRQQSGGLVKHDHVETSVYGRTLADDIE
VDGKVIATAGTDLGDRVIAALVEAGVDEVKIRSVLTCDSKVGQCAACYGRSLASGQLVAV
GEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITHGLPRIVELFEARTPKGVAPIAETA
GVVSFREDAKGKKIIVTPDDGGEEVAYPITRRQKLLVEEGSRVDVGQKMVVGAIDPKQVL
RILGPRATQVHLVNEIQSVYRSQGVGIHDKHIEVIVRQMLKRITVLEAGDADLLPGELVE
RGRFETENRRVVTTGGKAASGRPELMGITKASLATESWLSAASFQETTRVLTDAALSEKS
DPLLGLKENVIIGKLIPAGTGLARYRNIRVEPTEEAKAAVYAAYDEYDFTPFESAGSGEA
VRLDEVEVPR
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgttagatgttaacttctttgatgaattgcgaattggtttagcttcggctgaccacatc
cgtgagtggtcatttggcgaagtaaagaagccagagacaattaactaccgcacactaaag
cctgaaaaggatggactctttgacgagaagatcttcggaccaactcgtgactgggaatgt
tattgcggtaagtacaagcgcgtgcgcttcaagggaattatctgcgaacgttgcggtgtt
gaagttactcgcgcaaaggtacgtcgcgaacgtatgggacacatcgaacttgctgctcca
gtaacacatatctggtacttcaagggtgttccatcacgtcttggatatttactagacctt
gcacctaaggatctagaaaaagtaatttactttgctgcctacatgatcacagaagttgat
aaagaggctcgcgaagaagatatgccacaacttgaaaagaagttggcaaatgatcgcaag
aagattgaaacacgtcgcgataacgatctagacgttcgcaccaaaaagctcgaggcagat
attgctgaactcgagtcagaagatgcgaagtcagatgtaaagcgaaaagtacgcgagagt
gctgagcgcgaactcaagggacttcgtgatcgttcagagcgcgaactcaatcgtttagaa
gatgtgtggactcgctttaaaaaccttaaggttcaagatctcgaaggtgatgaaaacctt
taccgcgaaatgcgtgatcgttatggaatgtatttcaagggagatatgggcgcggctgca
attaagaagcgccttgaaactttcgatcttgaaactgagtacaagattcttaccgatctt
tctgagaacggaaaaggcgcaaagaagactcgcgctatcaagcgtctaaaggtcgttaat
gcattcatgacaacaagtaaccacccagcatcaatggttcttgattgcgttccagttatt
ccgcctgatctacgtccgatggttcaactagatggtggtcgttttgcgacttcagatctc
aacgatctttaccgtcgtgttattaaccgcaacaaccgtttgaagcgtcttgctgatctc
ggtgcaccagaaattatcgttaacaatgaaaagcgcatgcttcaagaagcagttgacgca
ctctttgataacggtcgtcgtggacgtccagtaacaggtccaggaaaccgtgcacttaaa
tcactttcagacatgctcaagggtaagcaaggacgtttccgtcagaacttgctcggtaag
cgcgttgattattcaggtcgttctgtaattgttgttggcccacagttgaagttacatcag
tgtggtcttccaaagcagatggcactggaactctttaagccattcgtaatgaagcgtctt
gttgaccttaaccacgcgcagaacattaaatctgcaaagcgcatggttgaacgtgctcgt
ccagttgtgtgggatgttctagaagaagttattgcagaacaccctgtactacttaaccgt
gcaccaaccctgcaccgtctaggtattcaagcttttgaaccacaattggttgaaggtaaa
gcaattcagattcacccactcgtatgtacagcatttaacgctgacttcgacggtgaccag
atggctgttcacttgccgctatctgctgaagcgcaggccgaagcacgtatcttgatgttg
tcttcaaacaacattttatctcctgctaatggtcgtccaattactacaccaacacaggac
atggttcttggtctttattggctcacaatggagcgcgaagcagaactcggcgaaggccgc
gcattctcttcagttgctgaagcaatcatggctcatgatcagcacacagtttcattgcaa
gcaaaggtaaagattcgcctatctacaacgggtcaaactctttctacaactgttggtcgc
gcattgtttaatgaagcgcttcctgcagattttcgtttcgtagatgttgacgtaacaaag
aagcaactaggacaaatcgttgacgaactcgctgagttctatccaaaggttgtcgttgct
gaaactctcgatgcactgaagtcacttggtttccactgggcatcacgcgccggtgcaact
attggtatcgaagatgttgttacacctcctcgtaaacttgaaattcttgaaacctatgaa
acacaggctgacaaggttcaatcacaatacgaaaagggactcatcacagatgacgagcgc
cgtcaagaactcattgagatctggacaaaggcaacagctgaagttggtaaagagatggaa
gaaaacttccctcgcgtcaatccagtgtggatgatggttacttcaggtgctcgtggaaat
atgatgcagattcgtcagatcgcaggtatgcgcggacttgtcgctaacccaaagggtgaa
attattcctcgcccaattaagtcaaacttccgcgaaggtctttctgtacttgagtacttc
atttctactcacggtgcacgtaagggtcttgcagatacagcgcttcgtaccgctgactct
ggttacctcacacgtcgtctctgcgacgttgcacaagatgtaattattcgtgaagaagat
tgcggtactgatcgcggtctagttcttccaattgcatctcgtcaacaatcaggtggactt
gtaaagcatgatcacgttgaaacatctgtatacggtcgaacccttgctgatgacatcgaa
gttgatggcaaagtaattgcaactgctggtacagatcttggtgatcgcgttatcgcagca
cttgttgaagcaggcgtggacgaagtaaagattcgctcagttcttacttgcgatagcaag
gtcggacagtgcgcagcttgctacggtcgctcacttgcatcaggtcaactcgttgcagtt
ggtgaagcagtcggaatcattgcagcacaatcaatcggtgaaccaggtacacagctaaca
atgcgtaccttccacactggtggtgttgcaggagatgacatcactcacggtcttccacgt
atcgttgaactcttcgaagcacgcacacctaagggtgttgcaccaattgcagaaaccgcg
ggtgttgtttcattccgtgaagatgcaaagggcaagaagatcatcgttacaccagatgat
ggtggcgaagaagttgcttacccaattacacgtcgtcagaagttacttgttgaagaaggt
tcacgcgttgatgtcggccagaagatggttgtcggtgcgattgatccaaagcaggtactt
cgtattcttggaccacgtgcaactcaagttcacttggtaaatgaaattcaatctgtatac
cgctcacaaggtgtaggtattcacgataagcacatcgaagtaattgttcgtcaaatgctc
aagcgcattacagtgcttgaagcaggcgatgctgatctacttccaggtgaactcgttgaa
cgcggtcgctttgagacagaaaaccgtcgcgttgtcacaactggtggcaaggcagcatct
ggtcgtccagaacttatgggaatcacgaaggcgtcccttgcaactgagtcatggttatca
gctgcttccttccaagaaaccactcgagttctaaccgatgcggccctgtctgagaagagc
gatccacttcttggcctcaaggagaacgtcatcatcggtaagttgatcccagctggaacc
ggtcttgctcgttaccgcaatatccgagttgagccaacggaagaagcaaaggcagcggtt
tatgcggcctatgacgagtatgacttcacaccatttgagtcagccggctcaggtgaagca
gttcgcctcgatgaagtagaggttcctcgctaa
DBGET
integrated database retrieval system
