Candidatus Planktophila limnetica: PHILAsVB114_01350
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Entry
PHILAsVB114_01350 CDS
T05067
Name
(GenBank) tRNA pseudouridine38-40 synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
plim
Candidatus Planktophila limnetica
Brite
KEGG Orthology (KO) [BR:
plim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plim03016
]
PHILAsVB114_01350
Enzymes [BR:
plim01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
PHILAsVB114_01350
Transfer RNA biogenesis [BR:
plim03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PHILAsVB114_01350
Prokaryotic type
PHILAsVB114_01350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
DUF5419
Motif
Other DBs
NCBI-ProteinID:
ASY27325
UniProt:
A0A249LEL8
LinkDB
All DBs
Position
240755..241591
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AA seq
278 aa
AA seq
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MTEPTLYPESGFRRLRIDLAYDGTNFAGWAKQPDQRTVQECLEESLGKISQISPETIVAG
RTDAGVHATGQVIHVDLPENLSLDDLVYKLNRLLDQDIRVHKISLAPEAFHARFSALRRK
YRYKILDDNRVLDPLARLDVATWYRALDVDVMNKTSQLLLGKHDFAAFCKFREGATTVRT
LEKYEWMRNADGFLVADIVADAFCYSMVRNLVGAVVCVADGRFDPQWIQGVLNNKERVSD
SLVFPARGLTLYQVDYPNDEDLLERAKESIARCNEENN
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacccactctctatcccgagagtgggtttcgtcgtttacggatagatctggct
tatgacggaactaatttcgcagggtgggcaaaacaaccagatcaacgcacagttcaagag
tgccttgaagaatcccttggaaaaatttcacaaattagcccagaaacaattgttgccggc
cgcactgatgcaggagtacacgccacaggacaagtaattcacgtggatcttccggaaaac
ctttcactcgatgatttggtttataaactcaatcggctcttagaccaagatattcgtgtc
cacaaaattagtcttgcgccagaagcatttcatgcacgcttttcagcgcttcgtcgtaaa
tacagatacaaaattctcgatgacaatcgagtgctagatcctcttgctcgactagatgtt
gcaacgtggtatcgagcattagatgttgatgtaatgaataaaactagtcagctcttgctg
ggcaaacacgactttgctgccttttgtaagtttcgagagggcgcaaccacggttcgcaca
ttagaaaaatatgagtggatgcgtaacgctgatggctttcttgttgcagatattgtggcc
gacgcgttctgctattcaatggtgcgaaatcttgttggcgctgttgtttgtgttgcagat
ggacgatttgatccgcaatggattcaaggagttctcaataacaaagagcgcgtctctgat
tctttagtttttcctgctcgaggtctaacgctgtatcaagtggattacccaaatgatgaa
gatctcttagagcgagccaaagaatccatcgctcgttgcaatgaagagaataattaa
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