Candidatus Planktophila limnetica: PHILAsVB114_01490
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Entry
PHILAsVB114_01490 CDS
T05067
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
plim
Candidatus Planktophila limnetica
Pathway
plim03420
Nucleotide excision repair
plim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PHILAsVB114_01490
03430 Mismatch repair
PHILAsVB114_01490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plim03400
]
PHILAsVB114_01490
Enzymes [BR:
plim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PHILAsVB114_01490
DNA repair and recombination proteins [BR:
plim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PHILAsVB114_01490
MMR (mismatch excision repair)
Other MMR factors
PHILAsVB114_01490
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
YsdB
GrpB
Motif
Other DBs
NCBI-ProteinID:
ASY27353
UniProt:
A0A249LE60
LinkDB
All DBs
Position
267221..269467
Genome browser
AA seq
748 aa
AA seq
DB search
MESTDPLLEGLNPQQQAAVIHSGGPLLVVAGAGSGKTRVLTRRIAYLMARRGVAPYEILA
ITFTNKAAGEMKDRVGALVGPVAKSMWVSTFHSACVRLLRQEAVRLGYGNSFSIYDSADS
LRLITIVAKELNLDPKRYPARQFQSIISNAKNELMGPHDYVNATKNQFEEVVADVYSIYQ
RRLQQANAMDFDDLILKTVEVLQKYPEAKARLRSRFKHVLVDEYQDTNHAQYILVKELVG
NAQEDLPPAELCVVGDADQSIYGFRGATIRNILQFELDYPNATTVLLEQNYRSTQNILSA
ANAVITKNESRKEKNLWSEEGAGAPLVGYVAESEHDEAEFVKDEIRELQRSGQSEPGDTA
IFYRTNAQSRVFEEVFMRSALPYKVVGGLRFYERKEIKDLLAYLRVLANPEDEISLRRVI
NVPKRGIGDRAIECVDLHAQTNNLSFWSGLSQCDQAPGMPNRAAQSVKEFVSMMIALRTL
VEAKTRPSVIIEAILEQSGLLAELSSSTDPQDEVRVENLKELVAVSMEYEERPFDELGED
EEISLAGFLEKVSLVADADEIPEGEDHGGVVTLMTLHTAKGLEFPTVFLTGMEDGIFPHS
RTLGEKDEIEEERRLAYVGLTRAEKRLYISRAEYRSSWGSPTYNPASRFLDEIPEGVIEW
RNQGGTSSSLSPSLTRKPRVATTAPPRATGKKSTAMQLAVGERVSHDTFGLGTVVAIAGE
GDKSEATINFGQYGEKRLLLRYAPVEKL
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtaccgaccccttactagaagggcttaatccgcaacagcaagcagctgttatt
catagcggcggtccacttcttgtagtcgcaggtgctggttctggaaaaactcgcgttctt
actcgcagaattgcatatctcatggcccgacgtggtgtcgctccatatgaaatattggca
attacttttacaaataaagcagcgggtgaaatgaaagatcgcgttggcgctttagttggc
cctgttgctaaatctatgtgggtctccacatttcactcagcctgtgttcgcctactgagg
caagaggcagtgcgattaggttatgggaattcatttagcatttatgactcagcagatagt
ttgcgcctcattaccattgttgcaaaagagctcaacttggatcccaagcgttatcccgct
cgccaatttcaatccattatctccaatgcaaaaaatgaactcatgggtccacatgactac
gtcaatgcaactaagaatcaatttgaagaagttgtggcagatgtttacagtatttatcaa
cgtagattgcaacaggccaatgccatggattttgatgacctgattctaaaaacagtcgaa
gttttacaaaagtatcctgaagccaaggctcgattgcgttcacgttttaagcacgtctta
gtcgatgagtatcaggacacaaatcatgctcaatacatattggttaaggagttggtggga
aatgctcaggaagacttgccaccagctgagttatgcgttgttggtgatgctgaccaatca
atttatggtttccgtggcgcaacgattcgaaatatcttgcaattcgaattggattaccca
aatgccacaacagtcttactcgaacaaaattatcgttccacacaaaatattctttcagca
gcgaacgcggtaattacaaaaaatgagagtcgcaaagagaagaatttgtggtccgaggaa
ggcgctggtgctccactagttggttatgtcgcagagtccgaacacgatgaagcagaattt
gtaaaagatgaaattcgcgaactgcaacgaagcggtcaatctgagccaggggacactgca
attttttatcgcaccaacgcgcaatcccgtgttttcgaagaagtcttcatgcgttctgcg
ctgccatacaaagtagtgggtgggctccgcttctatgagcgaaaagaaattaaagatctc
ttggcttacttacgcgtcttggcgaatccagaagatgagatatcgcttcgaagagttatt
aatgttccaaagcgcggaattggcgatcgcgcaattgagtgtgtggatttgcatgcgcaa
acaaataatctttcattctggagtggcttgtctcaatgtgatcaagcacccgggatgcca
aatcgtgcggcacaatctgtcaaagagtttgtatctatgatgattgcacttcgcacattg
gttgaggctaagactcgaccttctgtaattatcgaagcaattcttgaacaatccggatta
cttgcagagctatcttcgagtaccgatccacaagatgaggtgcgggttgaaaaccttaaa
gaactcgtagctgtttccatggagtatgaagaaagaccatttgacgaactcggcgaagat
gaagaaatctcacttgcaggtttcttagaaaaagtttcactagttgcagatgcagatgaa
attccagaaggcgaagaccatggtggcgtcgtaacgcttatgacacttcacactgcaaaa
ggtttggaatttcccactgtctttctcacaggaatggaagatggaatctttccgcactca
cgaacattgggtgagaaagatgagatagaagaagaacgtcgcttggcttatgtcggactt
actcgcgcagaaaaaagactttatatatctcgcgccgaatatcgatcatcatggggatcg
ccaacatataaccctgcttcacgttttctagatgaaattccagaaggagttatcgagtgg
cgaaatcaaggtggaacgtcatcatcgctttctccatctctgacacgtaaaccacgagtt
gcaacaacggcgccacctcgggcaacaggaaagaaaagcactgcaatgcaattggcagtg
ggtgagcgtgtgtcacatgacacattcggactcggaactgttgtggctattgcaggtgaa
ggagataagtctgaagccaccataaacttcggacagtacggtgagaagcgattactgctg
cgatatgcaccagttgagaagctctag
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