Candidatus Planktophila limnetica: PHILAsVB114_02050
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Entry
PHILAsVB114_02050 CDS
T05067
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
plim
Candidatus Planktophila limnetica
Pathway
plim03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
plim00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PHILAsVB114_02050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plim03019
]
PHILAsVB114_02050
03009 Ribosome biogenesis [BR:
plim03009
]
PHILAsVB114_02050
Messenger RNA biogenesis [BR:
plim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PHILAsVB114_02050
Ribosome biogenesis [BR:
plim03009
]
Eukaryotic type
Pre-60S particles
RNases
PHILAsVB114_02050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ASY27453
UniProt:
A0A249LEG2
LinkDB
All DBs
Position
complement(373213..373815)
Genome browser
AA seq
200 aa
AA seq
DB search
MALEHPHLIWIDCEMTGLDLEKDVLVEIAVLVTDSELNVIGDGVDVVIKATDAQLAAMNE
YVTDMHTASGLITEIPQGISVADAQAQVLAYLIASGAAEGKSPLAGNSVSVDRSFITRDM
PALNNFLHYRTIDVSSVKELSRRWFPRVYFAAPAKTGNHRALGDIKDSIAELKYYREAVF
VAAPGPESAQLKEIADRIGG
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggcacttgagcacccgcatctgatctggattgattgtgagatgacgggcctagacctc
gaaaaagacgttttggtcgaaattgccgtccttgtcaccgatagcgaactcaacgttatc
ggcgatggagtagacgttgtcatcaaagcaactgatgcgcagttggctgcgatgaatgaa
tacgtaacagatatgcacactgcttccggattaatcaccgagatccctcaaggaatttct
gtggccgatgcgcaagcacaagtgcttgcatacctgattgcatcaggagctgccgaaggt
aagtcgccactggctggaaactctgtaagcgttgatcgctcatttatcacccgcgatatg
cccgcgttaaataacttcttgcactatcgcaccatcgatgtgtcttcggttaaagagtta
tcacgccgttggtttccgcgagtttatttcgcagcccctgcaaagacaggcaatcatcgc
gcccttggcgacattaaagattcgattgctgagttgaagtactaccgagaagcagtattt
gttgcagcccctggcccagagtccgcacaattaaaggagatagccgatcgcattggcggg
tag
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