Candidatus Planktophila limnetica: PHILAsVB114_02455
Help
Entry
PHILAsVB114_02455 CDS
T05067
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
plim
Candidatus Planktophila limnetica
Pathway
plim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHILAsVB114_02455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plim03019
]
PHILAsVB114_02455
03016 Transfer RNA biogenesis [BR:
plim03016
]
PHILAsVB114_02455
Enzymes [BR:
plim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PHILAsVB114_02455
Messenger RNA biogenesis [BR:
plim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PHILAsVB114_02455
Transfer RNA biogenesis [BR:
plim03016
]
Prokaryotic type
tRNA degradation factors
PHILAsVB114_02455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
KH_1
S1
RNase_PH_C
KH-I_KHDC4-BBP
KH_NusA_1st
KH_PNO1_2nd
PCB_OB
KH_2
Motif
Other DBs
NCBI-ProteinID:
ASY27523
UniProt:
A0A249LEN4
LinkDB
All DBs
Position
456976..459174
Genome browser
AA seq
732 aa
AA seq
DB search
MEGQEIQSAVAVIDNGKFGKREIRFETGRLAKQAAGAAAVYLDDQTMIFSATTASKTPKD
QFDFFPLTVDVEEKMYAVGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFVKGLRNEVQ
IVVTVMALDPDHMYDVIAINAASMSTQLAGLPFSGPIGGVRVALIEGQWIAFPNHSQLDK
AVFDMVVAGRVTKDDVAIMMVEAEATSQTIDLIKGGAPTPTEEVVAQGLDAAKPFIKVLC
DAQSKLAKVAAKPTAEFPVFLDYQDDVFAAVEKAAKDQLAKAMTISGKQERETKIDEISA
SVKESVSAQFEGREKEVPAAFRSLTKKLVRQRVLREKIRIDGRGLRDIRPLSAEVEVIPR
VHGSAIFERGETQILGITTLNMLKMEQQLDTLNPENHKRYMHNYNFPPYSTGETGRVGTP
KRREIGHGALAERALIPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTLALFNAGVP
LRAPVAGIAMGLISDDVDGKVEYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLD
GIPASVLAGALLQAKEARLAILDVMNEAIDSPDEMSPFAPRIISVKIPVDQIGAVIGPKG
KIINQIQDETGADISIEDDGTIYIGATDGPSAEAARAQINAIANPTMPEVGERYLGTVVK
LAAFGAFISLMPGKDGLLHVSQIRKMHGGKRIENLEEVMKVGDKIQVEIGEIDPKGKLSL
VPVLEEGAASAE
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcaagagattcaatccgccgttgcagtaattgataacggcaagttcggaaaa
cgagaaattcgttttgaaacaggccgccttgcaaagcaagcagccggagcagcagcagtt
tatttagatgatcagacaatgattttctcagcaactactgcttctaaaacaccaaaggat
caatttgatttctttcctttaacagtagatgttgaagagaagatgtatgcagttggtcgc
attccaggatcatttttccgtcgtgaaggacgtccatcagaagatgcgattctgacttgc
cgcttaattgatcgaccattgcgtccatcatttgttaagggtcttcgcaatgaagttcaa
attgttgtaacagtaatggcgctagatccagaccacatgtatgacgtgatcgcgatcaat
gctgcttcaatgtcaacacaattagcaggtcttccattttctggtccaattggtggcgtt
cgcgttgcacttattgaaggtcaatggattgcattcccaaatcactcacaacttgataaa
gctgtatttgatatggtcgttgcaggtcgtgtgactaaagatgatgttgcaatcatgatg
gttgaagcagaagctacttcacagacaattgacttgattaaaggtggcgcaccaactcct
acggaagaagttgttgcccaaggccttgatgctgcaaaaccatttattaaggttctttgc
gatgcacaatcaaagcttgccaaggtggctgcaaagccaactgctgaattcccagtcttc
ttggattaccaagacgatgtttttgcagctgttgaaaaagccgcaaaggatcaacttgca
aaggcaatgacaatttcaggcaagcaagagcgcgaaacaaagattgatgaaattagtgcc
tccgttaaagagtcagtaagtgcacaatttgaaggacgcgaaaaagaagttcctgcagca
tttcgctctcttacaaagaaattagtacgtcaacgcgtattgcgcgaaaagattcgtatc
gatggacgtggattgcgcgatattcgcccactctctgcagaagttgaagtgattcctcgt
gttcacggttcagcaatctttgaacgtggtgagacacagattcttggtatcacaactctt
aacatgcttaagatggagcaacagctcgatactctcaatccagaaaatcacaagcgttat
atgcacaactacaacttcccaccatattcaactggtgaaacaggtcgtgttggaacacct
aagcgccgcgaaatcggtcacggtgctcttgcagagcgcgcattgattccagttctgcca
actcgcgaagagttcccttacgcaattcgtcaggtctctgaagcacttggttcaaatggt
tcaacttctatgggttcagtttgtgcatcaactcttgcactatttaatgctggagtacca
cttcgtgcgccagttgcaggcattgcaatgggtctgatttcagatgatgttgatggcaaa
gttgaatacgttgctttaacagacatccttggtgcagaagatgcatttggcgatatggac
tttaaagtcgccggaactaaggacttcgttacagcacttcaattagataccaagcttgat
ggaattccagcatcagttcttgctggagcacttctacaagcaaaagaagcgcgtcttgca
attctggatgtaatgaatgaagcgattgactcaccggatgagatgagtccatttgctcca
cgaattatttctgtgaaaattccagtagatcagattggtgcagtgattggtcctaagggc
aagatcattaaccagattcaagatgagactggcgcagacatttcaattgaagatgatgga
actatttatatcggtgcaaccgatggaccatcagctgaagctgctcgcgcacaaattaat
gcgattgctaatccaacaatgcctgaggttggcgaacgctacctcggtactgttgtaaag
cttgcagcatttggtgccttcatttcacttatgccaggtaaagatggcttgctccacgta
tctcagattcgcaagatgcatggtggaaagcgcattgaaaacctagaagaagttatgaaa
gttggagacaagattcaggttgaaattggtgaaattgatccaaagggaaaactttcgctt
gttccggtccttgaagaaggcgcggcttcagccgaataa
DBGET
integrated database retrieval system
