Candidatus Planktophila limnetica: PHILAsVB114_04040
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Entry
PHILAsVB114_04040 CDS
T05067
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
plim
Candidatus Planktophila limnetica
Pathway
plim03030
DNA replication
plim03430
Mismatch repair
plim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
plim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PHILAsVB114_04040
03430 Mismatch repair
PHILAsVB114_04040
03440 Homologous recombination
PHILAsVB114_04040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plim03032
]
PHILAsVB114_04040
03400 DNA repair and recombination proteins [BR:
plim03400
]
PHILAsVB114_04040
Enzymes [BR:
plim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PHILAsVB114_04040
DNA replication proteins [BR:
plim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PHILAsVB114_04040
DNA repair and recombination proteins [BR:
plim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PHILAsVB114_04040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
OB_MCM10
Motif
Other DBs
NCBI-ProteinID:
ASY27811
UniProt:
A0A249LFC4
LinkDB
All DBs
Position
complement(761368..764862)
Genome browser
AA seq
1164 aa
AA seq
DB search
MSSFAHLHVHTEYSMLDGAARVADLVAEVARQEMPAIAMTDHGNVFGAFDFYKQAKKVGV
KPIIGIEAYVAPESRFEKKRVKWADGGQDDVSGGGAYTHMTILAENNEGLSNLFRLSSLA
SLEGYYYKPRMDRELLTKYAKGLIATTGCPGGEIQTRLRMGAFKEAMAAASDYRDIFGAE
NFFLEIMDHGIDIESRVKADLLKLGKELGLPLLATNDLHYTFNEDARSHEALLCVQSGST
LADPKRFKFDNDEFYLKTPAQMRELFKEIPESCDNTLLIAERCNVTLREGENLLPRFEVP
AGETEDSWLIKEAERGLINRMGNRLTDEHHARLKYELDVMIKMGFPGYFLVVADLVAHAK
QVAIRVGPGRGSAAGSLVAYALGITGLDPLEHGLLFERFLNPERISMPDIDLDFDERRRS
EMIRYATTKYGEDRVAQIITYGTIKSKQAIKDSTRVLGYPYAIGEKLTKALPPSVMGKDI
SLAGVFDSTNDRYSEAGEFRTLYESDPDSKTVIDTAMGLEGLKRQWGVHAAGVILSREPL
LDVIPIHRREADGSIITQFDMGACEATGLLKMDFLGLRNLSVLDDALLNIKANKGVDVVL
EDLTLDDKKTFELLSRGDTLGVFQLDGGPMRALLRSMSPDSFQDISAVIALYRPGPMGEN
AHNNYADRKNKRKPVEPIHAELSDSLNEILGDTYGLIVYQEQVMAIAQKVAGFSLGRADL
LRKAMSKKNKEILDKEYIPFEAGMKTNGFGNAAIKRLWDVLIPFSDYAFNRAHSAGYGVV
SYWTAYLKANYPTEYMAALLTSVRDDKDKSALYLSECRRMGIQVLPPDVNESDAEYTPRG
TDIRFGLAAIRNVGEGVVASIKSGRDGKGRYQSFGDFLAKVDAQVCNKKTIESLIKAGAF
DSLSHTRKGLMAVYLEAIDSVIETKRAEAIGQFDLFGGESATSVSNVALDIPTGEWEKAM
LLSYEREMLGLYVSDHPLLGVEHVLRSGTDMSISELLDDGGHHDQIVTIGGLITSVTRKV
TRQGASWAVVTIEDLEGSIEALFFSNTYNQYALTLTEDRIVLIRGRVDKREDQVRFTALE
MKNADVSAAPTGPLVITLPINQCTPPVVDRMKEILRSHPGKREVHLHLDENGMRTVMKLD
TLITSSPSLSADLKSILGPNCLQG
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcttttgcccaccttcatgttcataccgagtattcaatgctcgatggtgccgcg
cgcgttgcagatcttgtagcagaagtcgcccgccaggagatgccggcgattgcaatgaca
gatcatggaaatgtatttggtgcttttgatttctataagcaagcaaaaaaagttggcgtt
aaaccaatcatcggaatcgaagcttacgttgcacctgaatctcgttttgaaaagaagcga
gtgaagtgggccgatggcggccaagatgatgtctctggtggtggtgcttatacgcacatg
acaattttggccgaaaacaatgaaggactttcaaatcttttcagactttcatcccttgca
tccctggaaggctattactacaagccgcggatggatcgtgagttactaacaaaatatgca
aaaggattgatcgcaacaactggctgtcctggtggagaaatacagactcgccttcgaatg
ggtgcatttaaagaagctatggctgcagcttcagattatcgagacatcttcggcgccgaa
aatttcttccttgaaattatggatcacggtatcgatatcgaatcacgcgttaaagctgat
ttacttaagttgggcaaagagcttggattgccactgctggccacaaatgatttgcactac
acattcaatgaagatgcacgttcacatgaggcactgctctgtgtgcaatctggatcaact
cttgcagatcccaagagatttaaattcgataacgatgagttttatcttaaaactccggca
cagatgcgcgaactattcaaagaaattcctgaaagttgcgataacactttgttgattgcc
gaacgatgcaatgtgacgctgcgcgaaggtgagaatttacttccacgctttgaagttccc
gcaggtgaaacagaggattcatggctgataaaagaggcagaacgtggattaatcaatcgc
atgggcaatcgattaactgatgaacaccatgcacgtttgaaatatgagttagatgtcatg
atcaaaatgggatttcctggttacttcttagtggttgcagatttagttgcacatgcaaag
caggtggcaatccgagttggtcctggtcgcggttctgccgctggttcacttgttgcctat
gcactcggaattacaggtcttgatccacttgagcacggtttactcttcgagcgattttta
aatccagaacgtatctctatgccagatattgatctggattttgatgaacgcagacgcagc
gaaatgattcgttatgcaacaacaaaatatggcgaagatcgcgttgctcaaatcattacc
tacggcaccattaaatctaagcaggcgattaaagactccactcgtgtacttggctatcca
tatgccatcggtgaaaagctcactaaagcgctgccaccatctgttatgggtaaagatatt
tctttggccggagtatttgattcaactaatgatcgatactcagaagccggggagtttaga
actctctatgaaagtgatcctgattccaaaacagttatagatactgcaatgggacttgaa
gggctcaagcgccagtggggcgtgcacgcagccggagttattctctctcgcgaaccacta
ttagatgtcattcctattcatcgccgcgaagcagatggttccatcattacccaatttgat
atgggtgcatgcgaagcaactggattgctcaagatggattttcttggccttcgaaatctt
tccgttctagatgatgctctgttaaacatcaaggcaaataaaggcgttgatgttgttcta
gaagatctcacgttagatgacaaaaaaacattcgaactcttatcccgcggtgacaccctg
ggtgtgttccagctagatggtgggccgatgcgcgcacttttgcgcagcatgtcacctgat
tctttccaagatatctctgcagttattgctctctatcgcccaggtccaatgggagaaaat
gcgcacaataactatgcggatagaaagaacaaacgcaaaccggtcgagccaattcacgct
gagttatcagattccctcaatgaaattttgggcgatacgtatggattaattgtttaccaa
gaacaggttatggccattgcgcaaaaagttgcgggattctcacttggacgcgcagatctc
ttgcgtaaagcaatgagtaagaagaacaaggaaattcttgataaggaatacattccattt
gaagctggtatgaagacaaatggttttggtaatgccgctatcaagcgcttgtgggatgtt
ttgattccgttctcagactatgcgttcaaccgtgcccatagtgcgggttacggcgtagtt
tcatattggaccgcatacctcaaagccaattatccaactgaatacatggcagcacttctc
acatctgttcgagatgataaagataaatctgctctgtatttaagtgagtgccgtcgtatg
ggtattcaagtattgccaccagatgttaatgaatctgacgccgaatacaccccacgagga
acagatattcgtttcggtctagccgcaattagaaacgttggcgaaggcgtggttgcatct
attaagagtggacgagatggcaaagggcgctaccaatccttcggagatttcttagccaaa
gtagatgcacaggtgtgtaataagaaaacaatcgaatcattgattaaggccggcgcattt
gattccctgtctcacacgcgtaaaggattaatggctgtttatttggaggcaattgattca
gtcattgaaacaaaacgcgctgaagcaatcggacaatttgatttgttcggaggcgagtca
gcaacgtcggtatcaaatgttgcgctagatattccaacaggtgagtgggaaaaagcaatg
cttttatcctatgaacgagaaatgttgggactctatgtttcagatcatccattactcggt
gttgaacatgtgttgcgttctggaacagatatgtcgattagcgaattactagatgatggt
ggccatcatgaccagatcgtcaccattggcggactgattacatctgtcacaagaaaagta
accagacaaggtgcgtcgtgggcagttgtcaccattgaagatcttgaaggatctattgaa
gctctcttcttttccaatacctacaatcaatacgccttaactctgactgaagatcgaatt
gttctcattcgtggtcgagttgataagcgtgaagatcaagtcagatttacagcccttgaa
atgaaaaatgcggacgtcagcgccgcaccgacaggtccgcttgtaatcaccctgccaatt
aatcaatgcacaccaccagttgttgatcgcatgaaagagattcttcgttcacaccctgga
aaacgcgaagttcatttacatctagatgagaatggaatgcgcaccgtgatgaaattggac
accttgattacatcatcgccatcgctgagcgctgatctcaaatcaatcctcgggcctaac
tgccttcagggctag
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integrated database retrieval system
