Candidatus Planktophila limnetica: PHILAsVB114_06150
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Entry
PHILAsVB114_06150 CDS
T05067
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
plim
Candidatus Planktophila limnetica
Pathway
plim03420
Nucleotide excision repair
plim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PHILAsVB114_06150
03430 Mismatch repair
PHILAsVB114_06150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plim03400
]
PHILAsVB114_06150
Enzymes [BR:
plim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PHILAsVB114_06150
DNA repair and recombination proteins [BR:
plim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PHILAsVB114_06150
MMR (mismatch excision repair)
Other MMR factors
PHILAsVB114_06150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
ADDB_N
ORC-CDC6-like
Motif
Other DBs
NCBI-ProteinID:
ASY28184
UniProt:
A0A249LGX4
LinkDB
All DBs
Position
complement(1170615..1172291)
Genome browser
AA seq
558 aa
AA seq
DB search
MALNSEEILASLDDEQRAVALASRGPVCVIAGAGTGKTRAITHRIAYAASIGVMDPQKVL
ALTFTARAAGEMRMRLRTLGVPTVAARTIHSAALKQLLYFWPQVFGGRAPDLLTTKTGFI
TQAITRADLQGALSVTSRDLMRDIASEIEWAKSSQVVPEDYVNEASKRTQKPRINPEQIA
QVYTAYMSLMKQERAMDFEDVLLLTAAMLEEEREVRERVQDQYRHFTIDEYQDISPLQQR
VINAWLGSRQELCVVGDPAQTIYSFAGATPVFLNTFTQRFPDAEVIRLTSGYRSTPEITL
MANTVLRSASMGQELVAQNDHGAKPSIAAYKDESAEIAGVVKDIGELLSEGAAAQEIAIL
ARTNNQLNSIEKAIAAAGLPYQVRNNERFFDRMDVREFLKGVRTASVIPTEGVYWLDELR
TLAQPFLTGATIDGIAGLLHLARELDADDSFAPKTLRAYLREVEDRVQQNNPPTMPVLTL
ATLHAAKGLEWERVFLIGVSESILPFESGNTGPENQSAIDEERRLFYVGITRAKKDLRMS
YRGEPSRFLRESGLLASS
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggcgctaaattctgaagaaatactcgcatccttagatgatgaacaacgcgctgttgca
ctcgcaagccgcggccctgtctgtgtaattgcaggtgctggaacaggtaaaacaagagca
atcacacaccgcattgcttatgcagcatctatcggagtgatggatccacaaaaagtttta
gcgctgacatttaccgcacgcgctgcaggtgaaatgcgtatgcgtcttcgcacattggga
gtaccaactgttgctgccagaacaattcactcagccgcccttaagcaattactttatttt
tggccacaagtatttggcggtcgcgccccagatttgctcacaactaagactggttttatt
acgcaagcaattacacgcgcagatttacaaggagccctatctgtgacatctcgcgatcta
atgcgcgatattgcatctgaaattgagtgggcaaaatcttcacaagttgtgccagaagat
tatgtaaatgaagcatcaaagcgcacgcaaaagccacggattaatccagaacaaatcgcc
caggtttacaccgcctatatgtctttgatgaagcaagagcgcgcaatggattttgaagat
gttttgttgctaactgctgcgatgctagaagaagagcgcgaagtgcgcgagcgagtacaa
gatcaataccgccacttcacaatcgatgagtatcaagatatttcaccgctacaacaacgt
gtgatcaatgcatggctaggcagtcgccaagagttatgtgttgtgggagaccctgcccaa
actatttattcattcgctggcgcaaccccggtctttttaaatactttcacccaacgtttt
ccagatgccgaagtaattagattaaccagcggatatcgctcaactcctgagattacattg
atggccaatacagttttgcgaagtgcttcgatggggcaagagttagtcgcccaaaatgat
cacggcgctaaaccatctattgcagcatataaagatgagtcagcagagattgcaggtgtt
gtaaaagatattggagagctgttatcagaaggcgccgcggcacaagagatcgcaattttg
gctcgcaccaataatcaactgaactccattgaaaaagcgattgcagccgcaggcttgccg
tatcaagtgcgcaataatgagcgattctttgatcgcatggatgttcgcgaattccttaag
ggtgttcgcaccgcttccgttattccaacagaaggcgtgtattggctcgatgagctgcgc
acgttggcacaaccatttttaactggcgccaccatcgatggcattgcgggtttattgcac
ctggcgcgtgagttagatgctgatgattcatttgcaccaaagacactacgtgcatatctg
cgtgaagttgaagatcgtgtacaacaaaataatccaccaacaatgccggtactgactttg
gcaacgttgcatgctgcaaagggcctcgagtgggaacgtgtgtttttaattggcgtcagt
gaatcgatattgccatttgaatcaggaaatacaggcccagaaaatcagagcgctatcgat
gaagagcgccgcttgttctatgtgggaatcacgcgtgcgaagaaggatttacgcatgagt
taccgcggtgagccaagccgattcctgcgtgaatctgggttactggctagttcgtaa
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