Candidatus Planktophila limnetica: PHILAsVB114_06165
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Entry
PHILAsVB114_06165 CDS
T05067
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
plim
Candidatus Planktophila limnetica
Pathway
plim03420
Nucleotide excision repair
plim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PHILAsVB114_06165
03430 Mismatch repair
PHILAsVB114_06165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plim03400
]
PHILAsVB114_06165
Enzymes [BR:
plim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PHILAsVB114_06165
DNA repair and recombination proteins [BR:
plim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PHILAsVB114_06165
MMR (mismatch excision repair)
Other MMR factors
PHILAsVB114_06165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Viral_helicase1
PhoH
Motif
Other DBs
NCBI-ProteinID:
ASY28186
UniProt:
A0A249LGZ5
LinkDB
All DBs
Position
complement(1174027..1177224)
Genome browser
AA seq
1065 aa
AA seq
DB search
MISPLEIAAALRSVDSKVSDPTPEQIAIISAPLEPAVVIAGAGSGKTETMSARVLWLVAN
KIVRPDEILGLTFTRKAAGELSIRVRKRLRQLKEAGLLDKDLALDTAITTYHSYAGRILS
EHAIRLGIDATSDPLGDAALWQIASDVVRNWPDENFTNESAVSTVIDDVIGLAKLVLEHQ
VSFESIRAEDEKTLAEMQRIGGTSNEEVRKVVRIAQQRIAILPMVEEFLKRRRDDGQLSF
DDQMSIAADIAERFPEACELERAKYKVVLLDEYQDTSQSQVRMLSALFGQGHPVMAVGDP
CQAIYTWRGASAGTIGTFAKYFPKSAGHSGAELFNLSITFRNDKKILEIANSISDQIRST
SSVRVDPLRPRDSAGDGEIAYGVFETLDGEAQGIAEYFHKHWFAPERIAIEEDKRTSFAV
LVRKRSQISMIESALRARSIPVEVIGVGGLIYVAEVADVLSLMKVVTDPEAGTALMRHLT
GPRLALGAKDIAALGAYSRKRAKLGHEDSHSFIAKIAAGNPDSAEADDLFIGSLIDALDE
IEQCDKESRALFSEVGFTRLSRFATDLRRLRSRAGGSIIDLITEIENYLNLDLEVSLRDG
TRNGRRHLERFLDEASKFSRSGGSISAFIEWLDVTSKKEGGLKSGAPEVRSDVVQLLTIH
TAKGAEWDFVAIPGLAEGTFPSTYTNDPDNWITNERQIPFALRGDGDELPVFSLAQCTKD
SEAGKVITAYAKSCAAIKKQEEIRLGYVAVTRARTHLLCTTSWWREGSRSVDPSELFAHV
TEVADKRGGELLSEASAPEDGVRNPIEVNPDSAYWPRDPLGDRREAFDAGVALVKKSQAH
ALTLSGDETLDSWVHDAQALIAEVKNRASSSIEVALPSRISTSTLVALHEDPAALALAIR
RPIPRSQDPYSRRGTQFHAWVEKQFGAMTLFDDSYLDYFDPIEEDGKLEDLKKSWLASEY
AQRKPAAIEVPFESVIAGVLVRGRIDAVYETPDGFEVVDWKTGSKQFGASAAIQLAMYRL
AWARLKSIDVSQVSAAFHYVPTSVTDKRADLLDEAALVGLIQSLQ
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgatttctccactagaaatagccgcagctcttcgaagcgttgactcaaaagtgtctgac
ccaacgcctgagcaaatcgcaattattagtgcaccccttgaaccagcagttgtcatcgca
ggtgcgggttctggaaaaacagaaacaatgagtgcgcgagtgttgtggttagttgccaac
aaaattgtgcgccctgatgaaattttaggattaacttttactcgtaaagctgccggtgag
ttatcaatacgtgtgcgaaagcgcctgcgccaattaaaagaagctggattgctagataaa
gatttagcgttggatacagcaattactacctatcactcatatgcgggacggattctgagc
gagcacgctattcgcttaggcattgatgcaacgagtgatccattgggcgatgctgcgctg
tggcaaattgcatccgatgttgtccgtaattggcctgatgaaaacttcacaaatgagagc
gcagttagcacagtaattgatgatgttattgggcttgccaaactagttttggaacaccaa
gtttcatttgaatcaattagagctgaagatgaaaaaacgttggcagagatgcaacgaatc
ggtggaaccagcaatgaagaagtacgaaaagtcgttcgtatcgcacaacaacgaattgcg
attttgccaatggtggaagagtttcttaagcgccgccgtgatgacggacaactctctttt
gatgatcagatgtccattgcagcagacattgcagaaagatttcctgaagcgtgcgaatta
gaaagagcaaagtacaaagttgtattactcgatgagtatcaagatacatctcaatcccag
gtgcgcatgctttcggcgctctttggacagggccatcctgttatggcagttggagatcct
tgccaggctatttacacgtggcgcggtgcatcagctggaactattggaaccttcgctaag
tattttccaaagagcgcgggccacagtggcgcagagttatttaatctttcaattacattt
agaaatgataagaagattctggaaattgcgaactcaatttcagatcagattcgttctact
tcatccgtacgtgtcgatccacttcgtccgcgtgatagcgctggtgatggtgaaatcgca
tacggagtctttgaaacactcgacggtgaagcacaaggcattgctgagtatttccacaag
cactggtttgcaccagagcgcattgccattgaagaagataagcgaacatcctttgcagtc
ttagttcgtaaacgctcacaaatttcaatgattgagagtgcacttcgtgcgcgaagtatt
cctgtggaagttatcggtgttggtgggctaatttatgtagcagaagttgcagatgtttta
tcacttatgaaagttgtaacagatccagaagctggcacagcgttgatgcgtcatctaaca
ggcccaaggttggcactcggtgcaaaagatattgcagcactgggtgcatattccagaaag
cgcgcaaaacttggtcacgaagattcacactcctttattgcaaaaatcgctgcaggaaat
cctgattcagccgaagcagatgatctctttattggctctctcattgacgcgctagatgag
atcgaacagtgcgataaagagagccgtgcgttatttagtgaagttggatttactcgtcta
tctcgttttgcaacagatcttcgcaggttacgttcgcgcgcaggcggctcaatcattgat
ttgattactgagatcgaaaactatctcaaccttgatctcgaagtttcattgcgcgatggc
actcgaaatggtcgccgtcaccttgagcgattcttagatgaagcctcaaagttttctcga
agcggtggcagcatctcagcatttattgagtggctagatgtgacatcaaagaaagaaggt
ggactcaaatctggcgcgcctgaagtgcgcagcgatgttgttcaacttctcaccattcac
actgcaaagggtgccgagtgggatttcgttgcaattccaggattagcagaaggaacattt
ccaagtacttatacaaatgatccagataactggattacaaatgagcgacaaataccattt
gctcttcgtggagatggcgacgaactgcccgtattttcactagcacagtgcacaaaagat
agtgaagcaggcaaagttattactgcttatgcaaaatcgtgcgcagcaattaagaaacaa
gaagagatacgccttggttatgtcgctgttactcgtgcacgtacgcatttactctgcaca
acatcatggtggcgcgaaggttctagaagtgttgatcccagcgaattattcgcccacgtc
acagaagttgcagataaacgtggtggagaattactcagcgaagcgagtgcaccagaagac
ggagtacgcaatccgatagaagtaaatccagatagcgcgtattggccacgcgatccattg
ggtgatcgtcgtgaagcatttgatgccggcgtggcactagtaaagaaatcacaggcgcat
gcactaactttaagtggcgatgaaactttggattcgtgggtccatgatgcgcaagcactt
attgcagaagtaaaaaaccgtgcttcatcaagtatcgaagtggcgctgccatcgcgtatc
tcaacatccacacttgttgcattacacgaagatccagcagcgctggcacttgctatccgc
aggccaatcccgcgttcacaagatccttattcacgtcgcggaacacaatttcatgcatgg
gttgaaaaacaatttggagcgatgactttatttgatgattcgtacttagattacttcgat
ccaattgaagaagatggaaaacttgaagatttaaagaagtcatggcttgccagcgaatat
gcacagcgcaaaccagccgcgatagaagttccttttgaatcagtcatagctggcgtactc
gtgcgcggtcgaatcgatgctgtttatgaaacaccagatggctttgaagttgttgattgg
aagactggctcaaaacaatttggagcatcggctgcaattcagttggctatgtatcgcttg
gcatgggcgcgattaaaatctattgatgtctctcaagtcagtgcagcatttcattatgtg
ccaacatctgtaactgataagcgtgcagatttactcgatgaagctgcgttggtaggtctt
attcaatctctacagtaa
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