Candidatus Planktophila limnetica: PHILAsVB114_06425
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Entry
PHILAsVB114_06425 CDS
T05067
Name
(GenBank) DNA excision repair protein ERCC-3
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
plim
Candidatus Planktophila limnetica
Pathway
plim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plim00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PHILAsVB114_06425
09124 Replication and repair
03420 Nucleotide excision repair
PHILAsVB114_06425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plim03021
]
PHILAsVB114_06425
03400 DNA repair and recombination proteins [BR:
plim03400
]
PHILAsVB114_06425
Enzymes [BR:
plim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PHILAsVB114_06425
Transcription machinery [BR:
plim03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PHILAsVB114_06425
DNA repair and recombination proteins [BR:
plim03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PHILAsVB114_06425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
IMD
Motif
Other DBs
NCBI-ProteinID:
ASY28232
UniProt:
A0A249LGK5
LinkDB
All DBs
Position
1228542..1230191
Genome browser
AA seq
549 aa
AA seq
DB search
MTDGPLIVQSDKTLLLDIDHGMSTECRRAIAPFAELERSPEHIHTYRLTNLGLWNARAAG
HDAEMVIDTLIKYSRYAVPHSILVDVAETMSRYGRLRLEADPVHGLILVTTDTAVLEEVI
RAKKIAPLLGVRIDNETIAVHPSQRGQIKQSLLRLGWPAEDFAGYVDGQAHEIALKQDDW
KIRPYQELAAEGFWHGGSGVVVLPCGAGKTIVGAAAMAHVKATTLILVTNTIAARQWREE
LLKRTTLNEDEIGEYSGAKKEIRPVTIATYQVMTKKKDGVYAHLDLFDTHDWGLIIYDEV
HLLPAPIFRFTADIQSRRRLGLTATLVREDGMEGEVFSLIGPKRFDVPWKEIESQGYIAP
AQCVEVRVNLSETERISYATAEPEERYRFCATTRTKRNVVESLVAHHAGEQILVIGQYID
QLDELSEVLGVPLIKGETPVKEREVLFNKFRTGEITCLVVSKVANFSIDLPDATIAIQVS
GAFGSRQEEAQRLGRILRPKSDGRSATFYSVVSRDTIDQDFAQNRQRFLAEQGYAYKIID
ADDVFQGKL
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgactgatggaccactgatcgttcagagcgataaaacactgcttttagatatcgatcat
ggaatgtcaacagaatgtcgccgcgctattgccccatttgcagaacttgaacgatctcca
gaacatatccacacatatcgattaacaaatcttggtctctggaatgcacgtgctgcagga
cacgatgccgaaatggttatcgacacacttattaagtattcgcgctacgcggtccctcac
tcaattcttgttgacgttgcagagacaatgtctcgctacggtcgcctgcgccttgaagca
gatcccgttcacggcttaattcttgtgacaactgatactgctgtccttgaagaagtaatc
cgtgctaaaaagattgcaccgttgttgggtgtgcgaattgataatgaaactattgctgta
cacccaagtcagcgtgggcagatcaaacaatcacttcttcgcctcggctggcccgcagaa
gacttcgcaggttacgttgatggacaagcccatgaaattgcacttaagcaagatgattgg
aaaattcgtccataccaagagttagctgctgaaggtttctggcacggtggctctggtgtg
gttgtactgccttgtggtgctggaaaaacaattgttggcgctgcagcaatggcacatgta
aaagcaacaacacttattcttgttacaaatacaatcgcagcacgtcagtggcgtgaagag
ttactgaagcgcacaactcttaatgaagatgagattggcgaatactctggtgcaaagaaa
gagattcgccccgtaacaattgcaacttatcaagtcatgacaaagaaaaaagatggcgta
tacgcccacctagatctctttgacactcatgactggggattaatcatttatgacgaagta
catctcttacctgcaccaatctttcgttttacagccgacatccaatctcgacgtcgcttg
ggactaactgcaacattggttcgcgaagatggaatggaaggtgaagtcttttcactcatt
ggtccaaagagatttgatgtgccgtggaaagagattgaatctcagggatatatcgctccc
gcccaatgtgtggaagtacgtgtaaatctgagtgaaaccgagcgaatttcatatgcaacg
gctgaaccagaagagcgatatcgattctgcgcaacaactcgtacaaagcgaaatgtcgtt
gaatcactagttgcacaccatgcaggtgagcagattttggttatcggccaatacattgat
cagctcgatgagttatccgaagtacttggggttccacttatcaagggcgaaactcctgta
aaagagcgcgaagtactgtttaacaaatttaggactggcgaaattacctgcttagttgtt
tctaaggtcgctaacttttctatcgacttacctgatgcaactattgcaattcaggtatcg
ggtgcatttggttcacgccaagaagaagcgcaacgcttaggtcgtatcttgcgaccaaag
tccgatggccgaagtgcaaccttctattcagttgtttcacgcgacactattgaccaagac
tttgctcaaaatcgtcagcgcttcttagccgaacaagggtatgcctacaaaattattgac
gctgacgatgtgtttcaaggcaagctctaa
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