Planococcus liqunii: QWY22_12160
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Entry
QWY22_12160 CDS
T10306
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pliq Planococcus liqunii
Brite
KEGG Orthology (KO) [BR:
pliq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pliq03016
]
QWY22_12160
Enzymes [BR:
pliq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QWY22_12160
Transfer RNA biogenesis [BR:
pliq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QWY22_12160
Prokaryotic type
tRNA splicing ligases
QWY22_12160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF7210
Motif
Other DBs
NCBI-ProteinID:
WKA49655
LinkDB
All DBs
Position
2396553..2397767
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AA seq
404 aa
AA seq
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MIKVSGTQTEALIYSNSPQPTAIEQIEELCNQAFLKDAKIRIMPDYHAGKGCVIGTTIEL
TDKVVANLVGVDVGCGVKVVQLDDRSIDFNQLDQIIRQFVPSGIELHSEETVGSVKEEFP
ESADFKAGHILNNDRSRFSLGTLGGGNHFIEVSRDEDGRHYLLIHTGSRYVGAKIAQHYQ
KLAFDSLNRSGISDIIAQLKMENRHSEIQSAIKRFGEEHPPIPKDLAYLEGQAFHDYIHD
MKLAQQYALANRNQIAETILSRMNLTQAGSFDSIHNYIDTENMILRKGATSAQKGEQLVI
PINMRDGSILATGKGNSDWNYSAPHGAGRVMSRTQASNTLNLEDFTATMKDVWTSSVSLE
TLDEAPMAYKPLEEIMGQIGETVEVSKIIKPVYNFKASDKFVRR
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgattaaagtatcgggaacacagacagaagcgttgatttattcaaattcacctcagcca
actgcaattgaacagattgaagagctatgcaaccaggcatttttgaaggatgccaaaatc
cgcatcatgccggattaccacgccggaaaaggctgcgttatcggaaccacgattgaatta
accgataaagtcgtcgccaatctggtaggggtcgatgtcggctgcggcgtaaaagtagtc
cagctggacgaccgctcgatcgatttcaatcaattggaccagattatccgccagtttgtg
ccaagcggcattgagctgcattcggaagaaaccgtgggatcggttaaggaagaatttcca
gaatccgctgattttaaagccgggcacattcttaacaacgaccgaagccgctttagcctc
ggcaccttaggcgggggcaatcattttatcgaagtgtcacgggatgaagacgggcgacat
tatttgctgattcataccggcagccgctatgtcggggcaaagattgcgcagcattatcaa
aaattggcgtttgattcattgaaccgcagcggcatttcagacatcattgcccaattgaag
atggaaaaccggcattcggaaatccagtccgccattaaacgctttggggaagaacacccg
ccgattccaaaagacttggcttatttagaaggccaagctttccatgattatattcatgat
atgaaactggcacagcaatatgcactcgccaaccgaaaccaaattgcagaaacgatcctt
tcccggatgaacttgacccaagccggttcatttgattcaatccataactatatcgacacc
gaaaacatgatattgcgaaaaggcgccacttctgcgcaaaaaggcgaacaacttgtcatt
ccgatcaatatgcgcgacggttccatcctcgcgaccggcaaaggcaatagcgattggaac
tattcagccccgcacggcgctggacgggtgatgagccggacacaagcttccaatacgctg
aacctggaagatttcactgctaccatgaaagacgtctggaccagttccgtgtcccttgaa
acactcgacgaagcgcctatggcctacaaaccgcttgaagaaatcatgggccagatcggg
gagactgttgaagtatcaaaaatcatcaaacccgtctataatttcaaagcaagcgataag
tttgtccgaagataa
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