Planococcus liqunii: QWY22_13340
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Entry
QWY22_13340 CDS
T10306
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pliq Planococcus liqunii
Pathway
pliq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pliq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QWY22_13340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pliq03019
]
QWY22_13340
Messenger RNA biogenesis [BR:
pliq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QWY22_13340
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
CFAP54_N
Motif
Other DBs
NCBI-ProteinID:
WKA49883
LinkDB
All DBs
Position
2631254..2632921
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AA seq
555 aa
AA seq
DB search
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDDLLGIDYVIPDYTYL
VKNADKIKGLFVTHGHEDHIGGIPYLLKKINIPVYGGKLALGLLRKKLEEHGLLRQTKMI
EIEEDDVIKFRKTSVSFFRTTHSIPDAFGVVVKTPPGNIVHTGDFKFDFTPVGEPANLLK
MAQIGSEGVLCLLSDSTNAEVPDFTMSERKVGESIKDIMRKVDGRLIFATFASNIYRLQQ
VTDEAVAQGRKIAVFGRSMDNAMTIGRELGYINAPEDAFVDTQTLNRLPANEVLILCTGS
QGEPMAALSRIANGTHRQIQIQPNDTVVFSSSPIPGNTSSVNRTINLLFRAGADVIHGSL
NNVHTSGHGSQPENKLMLRLIKPKFFMPIHGEYRMQKMHAQLAVDCDVPEQNTFIMENGD
VLALGQDEASVAGRIPSGDVYIDGSGIGDIGNIVLRDRRVLSEEGLVIVVVSVDMEKNKM
VSGPDIISRGFVYMRESGTMIYEAQQMLNRHLNKKIHGKNTEWTELKNEISDVLGPYLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgtaaagaatgaccagactgctgtattcgccctcggcggactaggcgaaatc
ggcaaaaacacgtatggtgtccaattccaggatgaaatcatcctgattgacgccggcatt
aaatttccggaagacgatttgctcggaatcgattacgtaattccggattatacttacctc
gttaaaaacgcagataaaattaaagggctgtttgtcactcatggccacgaagaccatatc
ggcggaattccttatcttttgaaaaagattaatattccggtgtacggcggcaaacttgct
ttgggcttgctgcgcaaaaaattagaagaacatggtttgcttcgccaaaccaaaatgatt
gaaattgaagaagatgacgtgattaaattcagaaaaacttccgtcagctttttccgtacg
acccacagtattcccgatgcttttggcgtagttgtcaaaacgccgcccggaaacattgtg
catacaggagatttcaaattcgatttcactccagtcggcgaacctgccaacttgttaaaa
atggcccaaatcggcagtgaaggcgttctgtgcctgctttcagacagcacgaatgctgaa
gttcccgactttactatgtcggaacgcaaagtcggagaatcaatcaaggacatcatgcgc
aaagttgatggccgtctgattttcgccactttcgcttccaacatctatcgtttgcagcaa
gtaaccgatgaagctgtggcccaaggccgcaaaatcgcggttttcggacgaagcatggat
aatgccatgaccatcggccgcgaacttggctacatcaatgctccggaagatgcgtttgtc
gatacacagactttgaatcgccttccggcaaatgaagtgcttattttatgtaccggttcc
caaggtgaaccgatggctgccctttcccggattgccaacggcacgcaccgccagatccag
attcagccgaatgatacagtcgtcttctcgtcttccccgatcccgggcaatacgagcagc
gtaaaccgcaccatcaacttgttgttccgtgcaggagcggatgttatccacggttcgttg
aataacgtccatacttccggccacggctcacagcctgaaaacaaattgatgctgcgcttg
atcaaaccgaaattctttatgccgatccacggcgaataccggatgcaaaaaatgcatgcc
caattagctgtagattgcgacgttccggaacaaaacacgttcatcatggaaaacggcgat
gttctggcacttggccaggatgaagcttcggttgccggccgcattccttccggcgatgtt
tacatcgatggcagcggaattggggatatcggcaatatcgtccttcgcgaccgccgcgtc
ctatccgaagaaggattagtgattgttgtagtcagcgtcgatatggagaaaaataaaatg
gtctccggaccggacatcatttcacgcgggtttgtctatatgcgcgagtccggcaccatg
atttatgaggctcagcaaatgctgaaccgccaccttaacaaaaaaatccatggcaagaat
accgaatggacagagttgaaaaacgaaatctctgatgtcctgggaccgtacttgtatgaa
aaaacaaaacgccgtccaatgattttgccgatcatcatggaagtctag
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