Planococcus liqunii: QWY22_17625
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Entry
QWY22_17625 CDS
T10306
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pliq Planococcus liqunii
Pathway
pliq02020
Two-component system
pliq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pliq00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
QWY22_17625 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QWY22_17625 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pliq03021
]
QWY22_17625 (rpoN)
Transcription machinery [BR:
pliq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QWY22_17625 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_3
HTH_IclR
HTH_AraC
HTH_Crp_2
DUF7626
LacI
Motif
Other DBs
NCBI-ProteinID:
WKA50700
LinkDB
All DBs
Position
3568807..3570102
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AA seq
431 aa
AA seq
DB search
MKNALHQQQKLNFSMTPELRQAIELLQYSTAELEHYIREQEMENPLIELKEKENRELGPA
EIPRSFPIQRSPQMPLEAIASSADNTRDSLYSNAKLIYSDEAVQKLLKFLIYNLDDNGYL
DFPGPAGPFSEDQIETGIHLLQKAGPAGIGARNLRECLLLQIQYLHPEKTAAKKMVEHHL
DLLAARKWKELSSLLKISLEEIKEIHLLIRTLQPKPCSFTCDFVPHYLKPDIVIEVVNNK
LSFQLNDNHLPSIHINKCYLPAHRPKDEASGYISSQLQKVQWLLTSIEQRRDTLIKITDV
LIDRQENFFKLGFDYLNPLTLKDVADEIGMHESTISRAVSNKVVQTAFGSIELKRLFSSK
LMDSEGNGVSQTAVKLLMKKFISHEDKHKPYSDQKIADYLAASEGIPISRRTISKYRDEL
NIPSANGRKEL
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacgcacttcatcagcaacaaaaactgaatttctctatgactcctgagctaagg
caggcgattgaactgctgcaatattcaactgccgagctcgaacattacatccgggaacag
gaaatggaaaatccgctcattgaactgaaggaaaaggagaatagagaacttggccctgca
gagattccacgctccttccctattcaacgaagcccgcaaatgccgcttgaagcaattgcc
agcagcgcagacaatacaagagactccttatatagcaatgccaaacttatttactctgat
gaagccgtacaaaaactgctgaaatttctgatttacaacctggacgacaatggctatctg
gattttcctggaccggctggaccgttcagcgaagaccagattgaaacaggtattcacctc
ctccaaaaagccggccctgcaggaatcggcgcccggaatttaagagaatgcctgctgctg
caaatccagtatttgcatcctgaaaaaacagccgcaaaaaaaatggtggagcaccactta
gacttgctggccgcacggaaatggaaagagctttcttccctgctgaaaatttctttagag
gaaatcaaagaaattcatttgctgatccgcacacttcagccaaaaccctgctcattcact
tgcgattttgttccgcactatttaaaacccgacatcgttatagaagttgtgaataacaag
cttagctttcagttaaatgacaaccatttgcccagtatccatataaataaatgctatttg
cccgcccatcggcccaaagacgaagcctccggctatatcagcagccaactacagaaagtt
caatggcttcttacgagcatcgagcagcggcgagatactctcatcaaaattacggatgtc
ctaatagaccgtcaggagaactttttcaaacttggtttcgactatttgaacccgcttacg
cttaaagacgtagcagacgaaatcggcatgcacgaatccacaataagccgcgccgtttca
aacaaagtagttcaaactgcttttggttctattgagttgaagcgtttattttcttccaaa
ctgatggactccgaaggcaatggcgtatcccagaccgcagtgaaattgctaatgaaaaaa
ttcatttcgcatgaagataagcacaagccctattccgaccagaaaatagctgactatttg
gctgccagtgaaggtattcccatttcaaggcgcaccatcagcaaataccgggatgaattg
aacattccttcggccaatgggcgaaaagaattataa
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