Pseudomonas serboccidentalis: NN484_03610 Help Entry NN484_03610       CDS       T10180                                  Symbol hrpA Name (GenBank) ATP-dependent RNA helicase HrpA   KO K03578   ATP-dependent RNA helicase HrpA [EC:5.6.2.6] Organism plis  Pseudomonas serboccidentalis Brite KEGG Orthology (KO) [BR:plis00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:plis03019]     NN484_03610 (hrpA) Enzymes [BR:plis01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      NN484_03610 (hrpA) Messenger RNA biogenesis [BR:plis03019]  Prokaryotic type   Bacterial mRNA degradation factors    Other RNA degradation factors     Others      NN484_03610 (hrpA) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DUF3418 OB_NTP_bind Helicase_C HA2_C DEAD WHD_HA2 AAA_19 AAA_22 nSTAND3 AAA_25 T2SSE NACHT ABC_tran nSTAND_NTPase5 AAA_30 SLFN-g3_helicase Motif Other DBs NCBI-ProteinID:  WDR36823 UniProt:  A0ABY7ZAV7 LinkDB All DBs Position 781917..785828 Genome browser AA seq 1303 aa AA seqDB search MTDESPSIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLAQWVARMQASCDQVLARK ASLPVIRYDDSLPIAAKRDEIKAALEKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI GHTQPRRIAARSVASRVAEELGTPLGSLVGYQVRFEDQSDANTLIKLMTDGILLAETQND RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP IVEVSGRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITAFPFIEPPDGKAISDGFNLLQELS AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ QAADQAHAQWKDSDSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH RQLSLICRDMQLSLNKEPADYPKLHKAVLVGLLSQIGQKTEDGDYLGARQRRFWIHPSSG IGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAY EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREGLVRGEIQSKAKCLTANQQLLEQLDEL EAKARRRDILADEETLYAFYDARLPAEIHQTATFDSWYRVNSQKNPQLLIMREEDVLARE ASEVTARDYPDTLHIGDLELALSYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGLI EVKCIALVRNLPKALRKNFVPVPDFIKAALQRMTFAEGSLPQALGRELLRMTGARVSDEA WAEAAQQVEGHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQSAKSQQPVE AKVFAPVAEKTQQKIAGLSMTVYPALVEEGGTVKEGRFSTPAEAEFQHRRALQRLLMQQL AEPAKFLRGKLPGQTELGLLYRELGRVDALVEDILLASLDSCILEGEEPLPRDGAGLAAL AERKRGNWTEHAERVARLTLEILKLWHGLQKRFKGKIDLAQAVALNDIKQQINNLVYPGF VRETPMQWLKELPRYLKAVEQRFEKLGAQVQKDRVWSGELAGLWSQYQTRAAKHAQEGKR DPQLELYRWWLEEYRVSLFAQQLGTKAPISDKRLNKQWTQVEP NT seq 3912 nt NT seq  +upstreamnt  +downstreamnt atgaccgacgaatcgccctccatcgacaaactgctgaaaaacctcgatcacgccatgctt gccgaccgtcaccggctgcggcggcagttgcttgagctgcgcaagaaacccgacgaggcc aagctggcccagtgggtagcgcgcatgcaggcatcctgtgatcaggtgctggcgcgcaag gccagcctgccggtgattcgttacgacgacagcctgccgatcgccgccaagcgcgatgaa atcaaggctgcgctcgagaagcatcaggtgctgatcatcgctggcgaaaccggttcgggt aaaaccacccagttgccgaaaatctgtctggaaatcggtcgcggccagcacggtctgatt ggccacacgcagccgcgccgaatcgctgcgcgcagcgtcgccagccgggttgccgaagaa ctcggtacgccgctcggttcgctggtcggctatcaggtgcgcttcgaagatcagagcgat gccaacaccctgatcaaactgatgaccgacggcatcctgctggcggaaacccagaacgac cgctacctcgaacgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctcaac atcgacttcctgctcggttatttgaaaaccctgctgccgcgtcgtccggacctgaaagtc atcatcacctcggcgaccatcgatctggaacgcttctccaaacatttcgacgatgcgccg attgtcgaagtgtccggccggaccttcccggtggacacctggtatcgcccgctgacgctt gagcaggacgaagagggtaaccgcgtcgaggacgacttgaccgtggatcaggcgatcctc gccaccctcgacgaaatcgccgcctacgagcgcagcgaacgccgcagccctggcgatgtg ctggtgttcctgcccggcgagcgcgagattcgcgacgccgccgacatgttgcgcaaggcg caactcaaacacaccgaaatcctgccgctgtacgcgcgcctgtcgccggccgaacagcag cggattttccagtcgcacccgggccggcgtgtggtgctggcgaccaacgtcgccgagacc tcgttgaccgtgccgggcatccgttacgtgatcgacagcggcaccgcgcgcatcagccgt tacagctaccgcgccaaggtccagcgtctgccgatcgaggcgatttcccaggccagcgcc aatcagcgtaaaggtcgttgcggccgggtcgagccgggcatttgtgtgcgcttgtacagc gaggaggatttcctcggtcgcccggaattcaccgatccggagattctgcgcaccaacctt gccgccgttattttgcagatgctgcacctgcgcctcggcgagatcactgcgttcccgttc atcgagccgccggatggcaaggcgatcagcgacggtttcaacctgctgcaagaactctcg gcggtggatcgcaacagccagttgaccccgctgggccggcagttggcgcgcctgccggtc gacccgcggatgggccgcatgctgcttgaagcggcgaaactcggcagcttgcaggaagtg ctgatcgtcgccagtgcgatgtcgattcaggacccgcgcgagcgtccgccggagcgtcag caagcggcggatcaggcccacgcgcaatggaaggacagcgattcggactttgccgggctg gtcaatctgtggcgtggctttgaagagcagcgccaggcgctgaccgccagcccgttgcgc aactggtgtcgcaagaacttcctgaattatctgcgcctgcgtgaatggcgcgattcccac cgccagttgagcctgatctgccgcgacatgcagttgagcctgaacaaagaaccggcggat tacccgaaattgcacaaagcggtgctggtcggcctgctcagccagatcggccagaaaacc gaggatggcgattacctcggcgcccgtcagcgacgtttctggattcacccgtcgtcgggg atcggcaagaagcgtccgcaatggctgatgaccgccgagctggtggaaaccaccaagctc tatgcgcgcatggtcgccaagatcgatgccgactggatcgagccgctggccgggcacctg atcaagaagaaccacttcgaaccgcactgggagaagaagcgtggccaggtcgtggcctac gagcagatcactctgttcgggctgatcgtggtcggccgccgcccggtgcattacggtccg gtggatccggtggtctcccgcgagctgttcatccgcgaaggcctggtgcgtggcgagatt cagtcgaaagccaagtgcctgacggccaaccaacagttgctcgaacaactcgacgaactg gaagccaaggcccgtcgccgcgacattctcgccgacgaagaaaccctctacgcgttctac gatgcgcgcttgccggcggagattcaccagaccgcgaccttcgacagctggtaccgggtc aacagccagaagaacccgcaactgctgatcatgcgcgaggaagacgtgctggcccgcgag gccagtgaagtcaccgcgcgggactacccggacacgctgcacatcggcgatctggaactg gcgctcagttaccactttgaacccaatcacccgcgcgacggcgtgaccctgcgcgtgccg gcaccgctgctgccgatgctgccgccggagcgcctcgaatggctggtgccggggctgatc gaggtcaagtgcattgctctggtgcgcaacctgccaaaagccttgcgcaagaacttcgtg ccggtgccggacttcatcaaggcggcgttgcagcgcatgacgttcgctgaaggttcgttg ccgcaggcactcggtcgcgagctgttgcgcatgaccggcgcgcgggtcagcgatgaagca tgggcggaagcggcgcagcaggtcgaagggcatctgcggatgaacctggaaatcgtcgat ggccagggcaagttcctcggcgaaggacgtgatctggccgaactgactgcacgcttcgct gaggctagtcaggctgcgttggcggtgccgcaaagtgcgaaaagtcagcaaccggtggag gccaaggtcttcgctccggtggcggaaaagactcaacagaagatcgccgggctgtcgatg acggtgtatccggcgctggtggaggagggcggtacggtcaaggaggggcgtttctcaacc ccggccgaagccgaattccagcatcgccgcgccttgcaacggctgctgatgcagcaactg gccgaaccggcgaagttcctgcgcggcaaattgccagggcagacagaattgggcctgctc taccgcgagctgggtcgggtcgatgcactggtcgaagacattctgctggccagcctcgac agctgcattctggaaggcgaagagccgttgccccgtgacggcgccgggctggcagccttg gccgagcgcaaacgcggcaactggaccgaacacgccgagcgtgtggcacggctgacgctg gagatcctcaagctgtggcacggtctgcaaaagcgcttcaagggcaagatcgatctggcc caggccgtggcgctgaatgacatcaagcaacaaatcaacaatctggtttatccgggtttt gtccgggaaacgccgatgcaatggctcaaagagctgccgcgttatctgaaggcggtcgag cagcgtttcgagaaactgggcgcgcaggtgcagaaggaccgggtctggagcggcgaactg gccggcctctggagccaataccagacccgcgctgccaaacatgcccaggaaggtaagcgc gatccgcagcttgagctgtaccgctggtggctggaggaataccgggtgtcgctgttcgcc cagcagttggggacgaaagcgccgatctcggacaaacgcttgaacaagcagtggacccag gttgaaccctga

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