Pseudomonas serboccidentalis: NN484_13630
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Entry
NN484_13630 CDS
T10180
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
plis Pseudomonas serboccidentalis
Pathway
plis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NN484_13630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plis03019
]
NN484_13630
03400 DNA repair and recombination proteins [BR:
plis03400
]
NN484_13630
Enzymes [BR:
plis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NN484_13630
Messenger RNA biogenesis [BR:
plis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NN484_13630
DNA repair and recombination proteins [BR:
plis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NN484_13630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
WDR38736
LinkDB
All DBs
Position
2971527..2973455
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AA seq
642 aa
AA seq
DB search
MHNTLEQVFGYPQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQVPALLLPHLTLVVS
PLLALMQDQLAFLKRHGINAGSIDSAQSRDDANDVMARACSGELKILMISVERLKNERFR
NFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQTLLLTATATPKVIADM
QAKFAIAEADVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMSARAGQPSIVYVTLQKTAE
HIAEHLGRNGIQAEAYHAGLPNDQREAIQKRFMAGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEREGIRCVLEEMQ
AAAAEGQWEFLLGPLADQSNIRSLPLKTLLVQLELRGLIAPRYAYYAEYRFKYLLEPEVL
LERFAGERRDFVAAIIQTSSRARTWATVDFEAMYTQYSAERNRVVTALDYFQEKGWVELE
SKQMTEVYNVLHSDFDSVVLSAELHGYFTRHEQAEIARIHAMLELFATERCLGYRLAEYF
GDHNAPERCGHCSVCHGDIARLPPPPELPALVDKSFAALCGDFIHRHEQHTGSVPTAERL
TRFLCGISVPLFTKLKARAISGYAALEEYPYAEVRSWVHEHL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcacaacaccctggaacaggttttcggttatccacagtttcgacccgggcaggaagcc
gcgatcagcgccgtactggccgggcgctcggcggcggcgattttccccacgggttccggc
aagtcgctttgctaccaggtgccggcactgttgctgccgcacctgaccctggtggtctcg
ccgctgttggcgttgatgcaggatcaactggcgttcctcaaacgtcacggcatcaatgcc
ggcagcatcgattcggcgcaaagccgcgatgatgccaacgacgtgatggctcgtgcctgt
tcgggtgagttgaagattctgatgatctccgtggagcgtttgaagaacgagcgtttccgc
aactttttgcagcaggtgccgatctcgctgttggtggtcgacgaggcgcactgcatctcc
gaatggggccacaactttcgccctgactacttgaaactgccggactaccagcgccagttc
aacatcccgcaaaccctgctgctgacagccacggcgacaccgaaagtgattgccgacatg
caggccaaattcgccatcgccgaagcggatgtggtgaccaccgggttctaccggcccaac
ctcaatctgctggtcgaaccggtgcggggtcaggacaagcgccggcggctggtagagtgg
atgagcgcgcgtgcggggcagccgagcatcgtctacgtgacgctgcagaaaaccgccgaa
cacatcgccgagcatctggggcgcaacgggattcaggccgaggcctatcacgccgggttg
cccaatgatcagcgtgaggcgatccagaagcgcttcatggccggacagtccaattgcatc
gtcgcgaccattgcgttcggcatgggtatcgacaagagcgacatccgcaacgtggtgcat
ttcgacctgcccaaatccatcgaaaactacagtcaggaaatcggtcgcgccggacgtgac
gggcagccctcggactgtctggtgctggccaatcgtgacagcctcaacgtgctggaaaac
tttgtctacggtgataccccggagcgcgaggggattcgttgtgtactggaggaaatgcag
gctgctgcggccgaagggcagtgggagtttctgcttgggccgctggccgatcagagcaac
attcgctcgctgccgctcaaaacgctgctggtgcaactggagttgcgtggcttgatcgcg
ccgcgctatgcgtattacgccgagtaccgtttcaaatacctgctggaaccggaagtgctg
cttgagcgtttcgcaggtgagcgcagggattttgtcgccgccatcatccagacttccagc
cgtgcacgcacctgggccacggtggatttcgaagcgatgtacacgcagtactcggctgag
cgcaatcgggtggtgacggcgctggactacttccaggagaaaggctgggtcgagcttgag
agcaagcagatgaccgaggtctacaacgtgctgcacagcgatttcgacagcgttgttttg
agcgccgagttgcacggttatttcacccggcatgagcaggctgaaatcgcccggattcac
gcgatgctcgagctgttcgccaccgagcgctgcctgggttatcgcctggccgaatacttc
ggtgaccacaacgcgcccgagcgctgcgggcactgttcggtgtgtcacggggatatagcg
cgcctgccgccaccgccggaactgccggcgcttgtggataagagtttcgcggcgctgtgc
ggtgattttatccacaggcacgagcagcacaccggcagtgtgccaacggcggagcgcctg
acgcggtttctgtgcgggatcagtgtgccgctgttcaccaagctcaaggcgcgggcgatt
tccgggtatgcggcgttggaggagtatccgtacgcggaagttcgcagctgggttcacgaa
cacctttga
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