Pseudomonas serboccidentalis: NN484_16305
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Entry
NN484_16305 CDS
T10180
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plis Pseudomonas serboccidentalis
Pathway
plis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NN484_16305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plis03019
]
NN484_16305
03009 Ribosome biogenesis [BR:
plis03009
]
NN484_16305
Enzymes [BR:
plis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NN484_16305
Messenger RNA biogenesis [BR:
plis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NN484_16305
Ribosome biogenesis [BR:
plis03009
]
Prokaryotic type
rRNA helicases
NN484_16305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
WDR34076
UniProt:
A0ABY7Z374
LinkDB
All DBs
Position
complement(3608027..3609700)
Genome browser
AA seq
557 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGELLDRLTADIGCTPRAL
AAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERSGDRPDRGDRERRAPMPLGEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLDKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccaatattgtcgctgca
gtagtcgctaccggctatgaagagccttcggccattcagcagcagtcgatcccgatcatc
ctcgccggtcacgatatgattggtcaggcgcaaaccggtaccggtaaaaccgctgccttt
gccctgcctatcctgcaccgcattgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaactcgtgagttggcgctgcaagttgcaaccgctttcgaaacctacgccaagcaa
atgccgggcgtaactgttgtggctgtctacggcggcgcgccgatgggcccacaattgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgtgacgaaaaagtcctcgccaccgtgaaccacctggttctggacgaggcggacgaa
atgctcaaactgggcttcatggacgacctggaagtcatcttcaaggccatgccggaaacc
cgtcagaccgtattgttctcggccaccttgccgcagtcgatccgtgccatcgccgagcgc
cacctgcgcgatccgaagcacgtgaagatccagagcaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctctgccgttctcagcttgctg
gaagtggaagatttcgacgctctgatcatgttcgtgcgcaccaagcaagcgaccctggat
ctggccagtgccctggacgccaaaggctacaaagccgctgcgctgaacggtgacatcgcc
cagaaccagcgtgagcgcgtcatcgactcgctcaaggatggccgtctggacatcgttgtc
gcgaccgacgttgctgcccgtggtctggacgttccgcgcatcacccacgtattcaacgtg
gacatgccgtacgatccggaatcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgcgctgctgctggtgactccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtcaccggtcagaaggttgccgaagtgcgtctgccggacgctcaggcggttctc
gatgcacgcatcaagaaactgaccaacagcctgtcgccgctggtcgctgatgccgagtcg
actcacggcgaactgctggatcgtctgaccgctgacatcggttgcaccccgcgtgcactg
gctgcagccctgctgcgcaaagctaccaacggtcaagcgttgaacctggcagcgatcgag
aaggaacgtccactggtgccgaacaacgcaccgcgtggtgaccgtcctgagcgttccggt
gatcgtccggatcgtggtgaccgcgagcgtcgcgcgccaatgcctttgggcgaaggtcgt
gcccgttgccgtaccgcgctgggtgcgcgtgacggtatcgccgccaagaacctgctgggc
gccatcctcaacgaaggtggtctggcccgcgaagcaatcggtcgcatccaggtgcgtgac
agcttcagcctcgtcgagctgccggaagatggtctggacaaactcctgaccaagctgaag
gacactcgcgtcgctggcaagcagctgaaactgcgtcgctaccgcgaagattga
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