Pseudomonas serboccidentalis: NN484_17125
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Entry
NN484_17125 CDS
T10180
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
plis Pseudomonas serboccidentalis
Pathway
plis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NN484_17125 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plis03019
]
NN484_17125 (rne)
03009 Ribosome biogenesis [BR:
plis03009
]
NN484_17125 (rne)
Enzymes [BR:
plis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NN484_17125 (rne)
Messenger RNA biogenesis [BR:
plis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NN484_17125 (rne)
Ribosome biogenesis [BR:
plis03009
]
Prokaryotic type
rRNA processing factors
NN484_17125 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
WDR34235
LinkDB
All DBs
Position
3776811..3780041
Genome browser
AA seq
1076 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAATNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAPAAPAPAPVAAPEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPATERPARNEERRN
GRQQSRNRNGRRDEERKPREERAPREERAPREPREERQPREAREVREPREVRTEAPAARE
ERAPRAPREERAPRAPREERKPRGEREERVRELREPLDAAPAAPVAAAAAVVAEERPARQ
PREERAPRPPREERQPRAEQAAAAVAEEEVNTNEEQLPEDGQDNAEGDRPRRRSRGQRRR
SNRRERQRDANGNVIEGSEESESGENAAPSATDLAAGLAVTAAVASSVISAPAEAQAHEQ
AERATAATLETTPVEAPVVEATTPVEVVAAPEVEVAPVREAQPQVEAAAEPVVEAPVVAA
EPVVETVAETVTETVREVREEQTAFNWVAEPAVAETPAPVVEAPVVEEAKAAEPVVEAVE
PAPAPVVEAPVVEAPVVAEEPAPVVEATPVSALTPNGRAPNDPREVRRRKREAERLQKEA
ELAAAAAPAAEVVEVASATEEAVVESVIAEAPRSVQDAVEHHQEAEEKEHEPKPLV
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcagaaaaaggccaac
atctacaaaggccgtatcactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagaacgtggcaacaagggcgccgccctgaccaccttcatcagcctg
gccggtcgttacctcgtgctgatgccgaacaacccgcgtgccggcggcatctcccgtcgc
atcgaaggcgaagagcgcaacgaactgcgtgaagcgctgaacggcctggttgcaccggcc
gacatgggtctgatcgtgcgcactgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactgtggaccgccatcaaagaagcctcgctggatcgctcc
gcacccttcctgatctatcaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgact
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtt
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtcgtt
gaactgccttccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgctctgcagaccaac
cttgaagctgccgaagaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgacccctgccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagccgaccgcgctcgcgtgcagatcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatctctgggcgaaagcagcggcatcgtc
tgcccacgctgcaacggcaccggcatcatccgtgacgttgaatcgctgtcgctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcactgccgaagtgcgcgctcaggtg
ccgatcccggtcgccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgtatcgtcattctgccgaacgatcacctcgaaaccccgcatttc
gaagttcagcgtctgcgtgacgacagcccggaagctgcgaccaaccagtccagctacgaa
atcgctgctgccgctgccgaagtcgaagaagtccagccagccgccgcgacccgcaccctg
gttcgccaggaggcagccgttaaaactgcaccggcccgtgccaacgctccggttccgacc
gaagtcgccgcgcctgccgctccagcaccggctccggttgccgcgccagaaccgagcctg
ttcaagggtctggtgaaatcgctggtcagcctgttcgccaccaaagaagagccagtcgct
ccggtcgtggttgaaaaaccggccaccgagcgcccagcccgcaacgaagagcgtcgcaac
ggtcgtcagcagagccgcaaccgtaacggtcgccgcgatgaagaacgcaagccgcgcgaa
gaacgtgcaccgcgtgaagagcgcgccccacgcgagccgcgtgaagagcgtcagccacgc
gaagcccgtgaagttcgcgagcctcgtgaagtccgcaccgaagcgccagccgcccgcgaa
gaacgcgctccacgcgctccgcgtgaagaacgtgcaccgcgtgctccacgcgaagaacgc
aagccacgtggcgagcgcgaagagcgtgtacgtgaactgcgcgaacctctggacgctgcc
ccggccgctccagttgctgccgcagctgctgtggttgccgaagaacgtccggctcgtcag
ccacgcgaagaacgcgcaccgcgtccgccgcgtgaagagcgtcaaccgcgcgccgaacag
gccgctgctgccgtcgctgaggaagaagtcaacactaacgaagagcaactgccggaagac
ggtcaggacaacgccgaaggcgatcgtccacgtcgtcgctcccgtggtcagcgtcgtcgc
agcaaccgtcgcgagcgtcagcgtgatgccaacggcaacgtgatcgaaggttcggaagaa
tccgagtccggcgaaaacgctgcaccgagcgctaccgatctggctgccggcctggccgtg
accgccgctgttgccagcagcgtgatcagcgcgccagccgaagcacaggcgcacgagcaa
gccgaacgcgccaccgctgccaccctggaaactactccagtggaagcgccggttgtcgaa
gcaactaccccagtggaagttgttgctgctccggaagtcgaagtcgccccggttcgcgaa
gctcagcctcaggttgaagcggctgcagaacctgtagtcgaagcgcccgtcgtggccgca
gagccggttgttgaaaccgtcgctgaaaccgtgaccgaaaccgtgcgtgaagttcgcgaa
gaacagaccgctttcaactgggttgccgagcctgccgtcgctgaaactccagcgccagtc
gttgaggccccggtggttgaagaagccaaggctgccgagccagtggttgaagcagttgaa
cctgctccagcaccagtggttgaagcaccggtcgtcgaagcgccagtggttgccgaagag
cctgctccagtggttgaagccactccggtcagcgccctgacgccaaacggccgtgcaccg
aacgacccacgtgaagtgcgtcgccgcaagcgtgaagccgagcgcctgcagaaggaagcc
gaactggctgccgctgctgctccggcggctgaagtggtcgaggttgcttccgcgactgaa
gaagccgtggttgagtcggtcatcgccgaagcaccacgctccgttcaggacgcggtcgaa
catcaccaagaggccgaggaaaaagaacacgagcctaaaccgctcgtgtaa
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