Pseudomonas serboccidentalis: NN484_18295
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Entry
NN484_18295 CDS
T10180
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plis Pseudomonas serboccidentalis
Pathway
plis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NN484_18295 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plis03400
]
NN484_18295 (mfd)
Enzymes [BR:
plis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NN484_18295 (mfd)
DNA repair and recombination proteins [BR:
plis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NN484_18295 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WDR34448
LinkDB
All DBs
Position
4004400..4007849
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRSRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVETGAGRERFPAQALPNL
AIEAKATQPLAALSAFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVSS
KDRLAITIAPLDEGLMLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLTILEIDNQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQATIEAVREDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRITALKLQAEQLGIKKV
DGGPQGGRIEFAAQTPVDPMTLIKLIQTQPKRYKFEGATMFKFQVPMERPEERFNTVEAL
FERLLPKTV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgctgcggcaggtaaacagcattggggcaac
cttcccggtgctgccctgagcctcgcgattgccgaggctgccagcgctgccaagcgcttc
accctgctactgaccgccgacagccagagtgccgaacggctggaacaggagctgagtttc
ttcgccccggatttgcccgttttgcattttcccgactgggaaaccctgccctacgatctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcttatacaggctgccggaa
ctggcgcacggcgtgctggtggtgccaatcaccaccgccctgcaccgcctggcgccgacc
aaattcctgctcggcagcagcctggtgctggatgtcggacagaagctcgacgtcgaacag
atgcgctcacggcttgaagccagcggctatcgctacgttgacacggtctacgagcacggc
gaattcaccgttcgcggtgcactgatcgacctgttcccgatgggcagcaagctgccgtat
cggatcgacctgttcgacgacgaaatcgaaaccctgcgtaccttcgatccggaaaaccag
cgctctatcgacaaggtcgattcggtcaagctgctgccggctcgggaattcccgctgcag
aaagatgcggtcacccgcttcaaggcgcgtttccgcgaacgtttcgacgtcgacttccgg
cgctgcccaatcttccaggacctgagcagcgggattaccccggccggtatcgagtactac
ctgccgctgttcttcgacgaaacctcgaccctgttcgattacctgccgcaggacacccaa
gtgttctcgctgccaggcatcgagcaagcggcggaaaacttctggaacgacgtgcgcaat
cgctacgaagagcgtcgcgtcgatccttcgcgtcctttattgccgcccgccgaattgttc
ctgccggtggaagactgctttgcccggctcaagaactggccgcgcgtggtcgccagccaa
caggacgtggaaaccggcgctggccgtgaacgcttcccggcccaggcgctgccgaatctg
gcgatcgaagccaaggccacgcaaccgctggcggcgctttcagcattcctcgacgaattc
cccggacgcgtgctgttcaccgccgaatcggcgggccgtcgcgaagtcctgctggagctg
ttggaacgcctgaagctgcgcccgaaaaccgtcgacagctggccggacttcgtcagcagc
aaggatcgcctggcgatcaccattgccccgctcgacgaaggcctgatgctcgacgacccg
gcgctggcgctggtggccgagagcccgctgttcggtcaacgggtcatgcagcgtcgccgt
cgggagaaacgcgccgatgccaacaacgatgcggtgatcaagaacctcaccgaactgcgc
gaaggcgcgccggtggtgcacatcgatcacggtgtcgggcgctatctgggcctgacgatt
ctggaaatcgacaatcaggccgccgagttcctcaccctggagtacgccgagaacgccaag
ctctacgtgccggtggccaacctgcacctgatcgcgcgctacaccggtagcgatgacgca
ctggcgccactgcaccgcctcggctccgaaacatggcagaaagccaagcgcaaagctgcc
gaacaggtgcgcgacgttgccgccgaactgctcgacatctacgcccgccgcgctgctcgc
gaaggctacgcgtttgccgacccgaaagccgattacgccacgttcagcgccggtttcccg
ttcgaagaaaccccggaccagcaagcgactatcgaagcggtgcgcgaagacatgctcgca
ccaaaaccgatggaccgcctggtctgcggcgacgtgggtttcggcaagaccgaagtcgcg
atgcgcgcggcgttcatcgccgtgcacggcggccgtcaggtggcgattctggtgccgacc
accctgctcgcccagcaacactacaacagcttccgcgaccgtttcgccgactggccggtg
accgtggaggtgatgagccgcttcaagtcggccaaggaagtcaacgccgcaatcgccgac
ttggcggaaggcaagatcgacatcgtcatcggcacgcacaagttgctgtccgacgatgtg
aagatcaaaaacctcggcctggtgatcatcgacgaagaacaccgcttcggtgtccgtcag
aaagaacagctcaaggccctgcgcagcgaagtcgacattctgacgctgaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcattgccacg
ccaccggcgcgacgcctgtcggtgcgcaccttcgtcatggagcagaacaagagcacggtc
aaagaggccctgttgcgtgaactgctgcgcggcggtcaggtttactatctgcacaacgac
gtgaagaccatcgagaagtgcgcggcggatcttgccgaactggtgccagaagcacggatt
ggcatcggccatgggcagatgcgtgaacgcgaactcgaacaggtgatgagcgacttctat
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgcca
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcgcagttgcaccag
ttgcgtggccgcgtcggccgtagccaccaccaggcttacgcttacctgctgaccccgccg
cgccagcaaattacctcggatgcggaaaagcgtctggaagcgatcgccaacactcaggac
ctcggtgccggtttcgtgctggcgaccaacgacctggaaatccgtggcgctggcgaactg
ctcggcgatggtcagagcggtcagatccaggccgtgggcttcacgctgtatatggaaatg
ctcgagcgcgcggtgaagtcgatccgcaagggcgagcagccgaacctcgatcaaccgctt
ggcggtggcccggaagtcaacctgcgcgtgccggcgctgattccggaagactatctgccg
gatgttcatgcacgcctgattctctacaagcgcatcgcttcggccaccgacgaggagggc
ctgaaggacctgcaagtcgagatgatcgaccgtttcggcctgctgccggagccaaccaag
aatctggtgcgcattaccgcgctgaagttgcaggccgagcagttgggcatcaagaaggtc
gatggcggcccgcaaggtgggcgcatcgagttcgccgcgcagacgccggtcgacccgatg
accttgatcaaactgatccagactcagccaaaacgctacaaattcgaaggcgccacgatg
ttcaagttccaggtgccgatggagcgcccggaagagcgctttaatactgtagaggcgctg
ttcgagcgcctcctcccgaaaactgtttga
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