Pseudomonas serboccidentalis: NN484_22235
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Entry
NN484_22235 CDS
T10180
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
plis Pseudomonas serboccidentalis
Brite
KEGG Orthology (KO) [BR:
plis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plis03009
]
NN484_22235 (rlmD)
Enzymes [BR:
plis01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NN484_22235 (rlmD)
Ribosome biogenesis [BR:
plis03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NN484_22235 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
Methyltransf_31
TRAM
MTS
Methyltr_RsmB-F
PCMT
Methyltransf_11
Methyltransf_23
Cons_hypoth95
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_15
DREV
Fer2
Methyltransf_4
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
WDR35193
LinkDB
All DBs
Position
complement(4875037..4876425)
Genome browser
AA seq
462 aa
AA seq
DB search
MAKHERGLRFQPTGGSKAAQIPTGKKQRLNIERLANDGRGIAFFEGRTWFVLGALAGEEV
EARVLGTHGKVVEARTERVFKASELRRPAACQHAGRCGGCSVQHLPHNEQLALKQRMLAE
QLLKVAGVAPDEWAAPLSGPEFGYRRRARIAVRWDMKAKKLEVGFRAAGSQDIVAISECP
VLVQPLQPIMTRLPEMLRRLSKPQALGHVELFSGSSLAVLLRHMAPLSEADLTILKEFCQ
FHEAQLWLHGEGEPQPVDATQSLGYRLEQWDLDLAWRPGDFIQVNAGVNEAMVAQALEWL
KPRADERVLDLFCGLGNFALPLAESVREVVAVEGVQTMVDRAAANAASNNLHNTKFFQAD
LSQPLTDAQWIGNGFSAVLLDPPRDGAFEVVRKLATLGAERLVYVSCNPATLARDTVELI
KQGYRLKRAGILDMFPQTAHVEAMALFEASQDGSSDPSGLSA
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcacgagagaggcctgcgcttccagcccaccggcggcagcaaggccgcgcaa
atcccgaccggcaaaaagcagcgcttgaacatcgagcgtctggccaatgacggtcgtggc
atcgcgtttttcgaaggccgtacctggttcgtcctcggcgccctggcgggtgaagaggtc
gaggcgcgggtgctcggcacccacggcaaagtggtcgaggcgcgcaccgagcgcgtattc
aaggccagcgaattgcgccgtccggcagcctgtcagcacgccggccgctgcggcggttgc
agcgtgcaacacttgccccacaacgaacagcttgccctgaaacagcgcatgctcgccgag
cagttattgaaggtcgcaggcgtcgcgccagacgaatgggccgcgccattgagcggtccg
gagttcggctatcgccgtcgcgcgcggatcgccgtgcgctgggacatgaaggcgaaaaaa
ctcgaagtcgggttccgtgctgccggcagccaggacatcgtcgcgatcagcgaatgcccg
gtgctggtacagcctttgcaaccgatcatgacccgtttgccggagatgctccgccgtttg
agcaagccgcaggcgctgggccatgtcgagttgttcagcggttcatcgctggccgtgctg
ttgcggcacatggcgccgttgtccgaagcggatctgacgattctcaaggagttctgccag
ttccatgaagcgcagttgtggctgcatggcgaaggcgaaccgcaaccggtcgatgccacg
cagtcgctgggctatcgcctggagcagtgggatctggacctggcctggcggccgggggat
ttcatccaggtcaacgccggggtcaacgaggcgatggtggcgcaggcgttggaatggctg
aaaccgcgcgccgacgagcgcgtgctggatctgttctgcggcttgggtaacttcgccttg
ccgctggccgaaagcgtgcgcgaagtggtggcggtggagggcgtgcagaccatggtcgac
cgcgccgccgcgaacgccgctagcaacaatttgcataacacaaagttttttcaagccgat
ttatcccagcctttgaccgatgctcagtggatcggaaacggcttttctgcggtactcttg
gacccaccgcgtgacggtgctttcgaggtggtgcgcaagctcgcgaccctgggtgccgag
cggttggtttatgtgtcgtgcaaccctgcaactctggcgcgcgatacggtcgaattgatc
aagcagggctaccggttaaaacgtgccgggattctcgatatgtttcctcagacggcgcat
gtcgaagccatggcgttatttgaagcgagccaggatggctcgtctgatccgtctggtctg
tccgcatag
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