Pseudomonas serboccidentalis: NN484_25210
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Entry
NN484_25210 CDS
T10180
Symbol
xseA
Name
(GenBank) exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
plis Pseudomonas serboccidentalis
Pathway
plis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
NN484_25210 (xseA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plis03400
]
NN484_25210 (xseA)
Enzymes [BR:
plis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
NN484_25210 (xseA)
DNA repair and recombination proteins [BR:
plis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
NN484_25210 (xseA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
DUF4807
Motif
Other DBs
NCBI-ProteinID:
WDR35750
LinkDB
All DBs
Position
complement(5524569..5525948)
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AA seq
459 aa
AA seq
DB search
MIKDPFSRLGLDREVLTVSQLNGRARVLLEDVFSNIWVEGEISNLARPASGHVYFTLKDS
GAQVRCALFRNNAARVRQALKDGLAVKVRGKVSLFEGRGDYQLILDTVEPAGDGALRLAF
DALKEKLSAEGLFSAERKVPLPAHPQRIGIISSPTGAVIRDIISVFRRRAPQVQLTLIPT
AVQGREATAQIVRALKLADARGFDALILARGGGSLEDLWCFNEEAVARAVDACVTPIVSA
VGHETDVSISDFVADVRAPTPSAAAELLAPDSSDLVRRVESLHRRLVMRMRDRLMRDRLR
LEGISRRLRHPGERLRQQAQRLDDLDMRMRRAFERQLTTRRERLIRLETRLAGQHPGRQL
AMLRQRLDSLAERLPRAMREGLKSRRLQLHSQMQTLHVVSPLATLGRGYSILLDERGHAI
RNAAQTHTGQRLKARLGEGELQVRVEDNHLTPVTLSLLD
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgattaaagatcccttttcaaggctcggccttgaccgtgaagtcctgaccgtcagccag
ctcaacggccgtgcgcgggtgttgctcgaagacgtgttcagcaacatctgggtcgaaggc
gaaatctccaacctcgctcgccctgcgtccggccacgtgtatttcaccctcaaggacagc
ggtgcgcaggtacgttgtgcgctgtttcgcaacaatgcggcgcgggtgcgtcaggcgttg
aaggacgggctggccgtgaaagtgcgcggcaaggtctcgctgttcgaagggcgcggcgac
tatcagctgattctcgataccgtggagccggccggcgatggcgcgctacgcctggcgttt
gatgcactgaaggaaaaactcagcgccgaaggcctgttcagcgccgaacgcaaagtgccg
ctgccggcgcatccgcagcgcatcggcatcatcagttcgccgaccggcgcggtgattcgc
gacatcatcagcgtgttccgccgccgggcgccgcaagtgcaactgacgctgatcccgact
gccgtgcagggccgcgaggccacggcgcagatcgtccgcgcgctgaaactggcggatgcc
cgtggtttcgacgcgctgatcctcgcccggggcggcggctcgctggaagacctctggtgc
ttcaacgaagaagccgtggcccgcgcggtggatgcctgcgtcacgccgatcgtcagcgcc
gtcgggcatgaaaccgatgtgtcgatcagcgactttgtcgccgacgtccgcgcaccaacg
ccctccgctgccgccgaattgctggccccggattccagcgacctggtgcgccgcgtcgaa
agcctgcatcgccgcttggtgatgcgcatgcgtgaccggctgatgcgcgatcgtctgcgc
ctggaaggcatctcccgccgtttgcgtcacccgggcgagcgtctgcgtcagcaggctcag
cgtctggatgacctggacatgcgtatgcgccgcgccttcgagcgtcagctcactacccgc
cgtgaacgtctgatccgcctggaaacccgccttgccgggcaacacccgggacgccaactg
gcgatgttgcgccagcgcctcgacagcctcgccgaacgcctgccccgcgccatgcgcgaa
ggcctgaagagccgtcgcctgcaactgcacagccagatgcagacgctgcatgtggtcagc
ccgctggcgaccctcggccgtggctacagcattctgctggatgagcgcggccatgcgatc
cgtaacgccgcgcagacccacaccggccagcgcctgaaagccagactcggcgaaggcgaa
ctgcaagtgcgcgtcgaggacaatcacctgacgcccgtcaccctttctttactggactga
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