Polaribacter litorisediminis: K8354_00830
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Entry
K8354_00830 CDS
T07786
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
plit
Polaribacter litorisediminis
Pathway
plit03030
DNA replication
plit03430
Mismatch repair
plit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
plit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K8354_00830 (dnaE)
03430 Mismatch repair
K8354_00830 (dnaE)
03440 Homologous recombination
K8354_00830 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plit03032
]
K8354_00830 (dnaE)
03400 DNA repair and recombination proteins [BR:
plit03400
]
K8354_00830 (dnaE)
Enzymes [BR:
plit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K8354_00830 (dnaE)
DNA replication proteins [BR:
plit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K8354_00830 (dnaE)
DNA repair and recombination proteins [BR:
plit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K8354_00830 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Menorin
HHH_3
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
UAM98405
LinkDB
All DBs
Position
complement(197438..201778)
Genome browser
AA seq
1446 aa
AA seq
DB search
MYLIFDTETTGLPKSWNAPITNTDNWPRCVQIAWQLHDEMGNVLEHNDFLIKPKGYNIPY
DAERIHGISTELAEEQGITLDESLRLFNEVLSKTKFIVGQNLNFDINIMGCEFHRLGIEN
TLTSLPILDTCTEKTASMCQIPGGRGGKFKLPTLTELHKHLFGTNFGEAHNATADVEATT
RCFLELIRLREFTKEQLDVDADYFKNFSEINPKPIQVIGLKHINLKKESDKIRKRLEKLK
DNVTTKSTSVGLAELENVQFSHLHNHTQYSVLQSTMQIGHIVAAAAKDNMPAVAMTDTAN
MMASFHFVSAVLNHNKTAATPMKPIVGCEFNVCEDHKNKSVKDNGYQVVLLAKNKKGYHN
LAKMSSIAFVDGFYYVPRIDREIIKKYKEDIIVLTGNLYGEVPSKILNLGEKQAEDSLIW
WKEQFKDDFYIELMRHHQQDENIVNETLLKFSKKHDVKIIATNNTFYLEKKDANAHDILL
CVKDGEKQATPIGKGRGYRYGLPNDEYYFKSTAEMKTLFADLPEAISNIQEIVDKIEIFT
LARDVLLPAFDIPDKFKDAKDEEDKGKRGENNFLKHLTFEGAKKRYGEITESIKERLDFE
LSVIEKTGYPGYFLIVEDFIREARKMDVSVGPGRGSAAGSVVAYCLWITNIDPIKYDLLF
ERFLNPERVSMPDIDIDFDDEGRSRVMDYVIDKYGANQVAQIITYGTMAAKSSIRDTARV
LDLPLFEADRIAKLIPLIKLKNIFGEDAKSKGKVADLRAEEKQLVEELKNLSYGNDLTSE
TINKATILEGSVRNTGIHACGVIITPGDITNYVPVALAKDSDMYVTQFDNSVVESAGLLK
MDFLGLKTLTLIKDTVKIVKAKHDIDLDPDSFPLDDEKTYELFQKGETVGIFQYESPGMQ
KHMRSLKPTVFADLIAMNALYRPGPMEYIPSFINRKHGTEDIEYDLPAMEEYLAETYGIT
VYQEQVMLLSQKLANFTKGEADVLRKAMGKKQIAVLDKMKPKFIEQAGENGHDEKKLEKI
WKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMASVLSNNMNDIKSVSFFMEEC
KRMGLQVLGPDLNESFLKFSVNNDGAVRFGMAAVKGVGAGAVRAIIKEREENGNYTSIFD
LAKRVDLRAANKKSFDSLIKAGAFDSFADTHRAQYFHIDEKGLTFLERAMKFGSKYQENK
NSAQVSMFGETSTVQFPEPDIPECETWGTMELLSQEKEVIGIYISAHPLDDFKNEMIFCN
ASLKHFKGDIGKYVNMNLSFAGIISDVQHRVSKAGKGWAMFTIEDYGDSHEFRIFGEEYL
RMKHFLVPNSFLFVRCTIQPGWTNKETGIAGEPRMKFTEMKLLHDIMDELCKKITIKIQL
QDLQENTILNLETILKNNPGKQSLNFTVWDAKEKIEVSLPSRNTKIKVSNELLATLENQQ
INFKLN
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgtacttaattttcgatactgaaactactggtttacccaaaagttggaacgctcctata
acaaatacagataactggccaaggtgtgtgcaaattgcttggcaattgcatgatgaaatg
ggaaatgttttagaacacaatgattttctcattaaaccaaaaggctataacattccttat
gatgccgagagaattcacggaatttctactgaattagctgaagaacaaggaattacttta
gacgaaagtttacgcttatttaatgaagttttaagcaagaccaaatttattgtaggtcag
aatttgaatttcgacatcaatattatgggctgtgaatttcatagactaggcattgaaaac
accctaacctccctcccaattttagatacgtgtacagaaaaaacggcatccatgtgtcag
attcctggaggtcgtggcggcaaatttaaattaccaaccttaacagaattacacaaacat
ttattcggtactaattttggtgaagctcataatgcaaccgccgatgtagaggcaactacc
cgctgttttttagagttaattcgtcttcgagaatttaccaaagaacaattagatgttgat
gcagattattttaaaaatttctctgaaatcaatccaaaaccgattcaggttattggttta
aaacatatcaacctaaagaaagaaagtgacaaaattcgcaaacgtctagaaaaattaaaa
gacaacgtaacgactaaatctacttctgtaggtttagcggaattagaaaacgtacaattt
tcgcatttgcataatcatacacaatattctgttttacaatctaccatgcaaattggtcat
attgtagcagccgctgccaaagataatatgccagcagttgccatgacagatactgcgaat
atgatggcgtcttttcattttgtgagtgctgttttaaaccataataaaactgcagcaact
cccatgaaaccgattgtgggttgcgagtttaatgtgtgtgaagatcacaagaacaaatcc
gtaaaagacaatggatatcaagttgttttattagcgaaaaacaaaaaagggtatcataat
ttagctaaaatgtcttcgattgcttttgttgacggattttactatgttccaagaattgat
cgcgaaataatcaaaaaatacaaagaagatattattgttttaacgggaaatttatatggt
gaagttccgagtaaaattctaaatcttggagaaaaacaagcagaagattctttaatttgg
tggaaagagcaatttaaagatgatttttatattgaattgatgcgccatcatcaacaagac
gaaaatattgtcaatgaaactttattaaaattttctaaaaagcacgatgttaaaattatt
gcgaccaacaacaccttttatttagagaaaaaagatgccaatgcccacgatattttattg
tgtgtaaaagatggtgagaagcaagcaactcctattggtaaaggccgtggttatcgatat
ggtttgcctaatgatgagtattacttcaagtcgacggctgaaatgaaaacgctttttgct
gatttgcccgaagccattagtaacattcaagaaattgttgataaaattgagattttcact
ttggcaagagacgttttgctacctgcttttgatattcctgataaatttaaagatgcaaaa
gatgaggaagacaaaggtaaacgtggtgaaaataatttcttaaaacacttaacgttcgag
ggtgctaagaaacgttacggagaaattaccgaaagtatcaaagaacgtttagattttgag
ctctctgtgattgaaaaaactgggtatcctggttattttttaattgttgaagactttatt
cgagaagccagaaaaatggatgtttccgtaggtcctggtcgtggttctgccgcgggttct
gtggttgcgtactgcttgtggattaccaatatagaccctattaaatacgatttacttttt
gagcgtttcttaaatccagaacgtgtttccatgcccgatatcgatattgattttgatgat
gaaggccgaagccgagtcatggattatgtcatcgataaatatggtgccaatcaggttgca
caaattattacctatggcaccatggctgcaaaatcttctataagagatacggctagagtt
ctagatttaccactgttcgaagcagatagaattgccaaattaattccgttaattaaactt
aaaaatatttttggggaggatgcaaaaagtaaaggtaaagttgctgatttaagagcagaa
gaaaaacaattggtcgaagagttaaaaaatttatcttatggaaatgatctaacttcagaa
accatcaacaaagcaactattttagaaggctctgttcgaaatacaggaattcacgcttgt
ggtgttatcattactccaggagatattaccaattatgttcctgttgcactcgcaaaagat
tctgacatgtatgttacgcaatttgacaactctgtcgtggaatctgcaggtttgttaaaa
atggatttcttgggattaaaaacgctgactttaattaaagacactgttaaaattgtaaaa
gcaaaacatgatatagatttagatccggatagttttcctttggatgatgaaaaaacgtat
gaactattccaaaaaggagaaacagtgggtatttttcaatacgaatctccaggaatgcaa
aaacatatgcgctctctaaaaccaactgtttttgctgatttaattgccatgaacgccttg
tatagacccggacctatggaatatattccgagttttatcaacagaaaacacggtactgaa
gatattgaatatgatttacctgccatggaagaatatttggcagaaacctacggaattaca
gtgtaccaagagcaagtaatgttgctctcacaaaagttggcaaatttcaccaaaggtgaa
gccgatgttttacgaaaagccatgggtaaaaaacaaattgcggttttagataaaatgaaa
ccaaaattcatagagcaagcaggtgaaaatgggcatgatgaaaaaaagttagaaaaaata
tggaaagattgggaggcttttgcaagttatgcttttaacaaatctcactctacttgttat
gcttggattgcctatcaaacagcctacttaaaagcacattatcctgcagaatatatggct
tctgtgctttctaataatatgaatgacattaaatcggtttccttttttatggaagaatgt
aaacgaatgggcttgcaagttttaggacccgacttaaatgaatctttcttaaaattctct
gtaaataatgatggtgctgttcgttttggaatggcggcagtaaaaggtgtgggtgctggt
gcggtaagagctattattaaggaacgagaagaaaatggcaattatacgtccatttttgat
ttggcaaaaagagtagatttacgtgctgcaaacaaaaaatcttttgatagtttgataaaa
gctggtgcttttgattcttttgcagacacacatagagcacaatattttcatatcgatgaa
aagggattgactttcttagaacgtgccatgaaattcggaagtaaatatcaagaaaacaaa
aattctgcacaggtttctatgtttggcgaaacatctaccgtacaatttccagaaccagac
attcctgaatgtgaaacttggggaaccatggaacttttatcacaagaaaaagaagtcatc
ggaatttatatttctgcgcatcctttagacgattttaaaaatgaaatgattttctgcaac
gcttccttaaaacattttaagggtgatattggtaaatatgtgaacatgaatttgtctttt
gcaggtataatttctgatgtacaacatcgagtttctaaagccggaaaaggttgggcaatg
tttacgattgaagattatggtgacagtcatgaatttagaatttttggcgaagaatattta
agaatgaaacactttttagtgccaaattccttcttatttgtgcgctgcaccattcagcct
ggatggacaaataaagaaacaggaattgctggagaaccaagaatgaaatttacagaaatg
aaactattgcacgatattatggatgaactctgcaaaaaaataaccattaaaattcaatta
caggaccttcaggaaaatacgattttaaatttagaaaccattttaaaaaataatccagga
aagcaatctctaaactttaccgtttgggatgccaaagaaaaaattgaagtaagcttgcct
agtagaaatacaaaaataaaagtgtctaatgaattgttggcaacgttagagaatcagcaa
ataaattttaaactaaactaa
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