Polaribacter litorisediminis: K8354_04720
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Entry
K8354_04720 CDS
T07786
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
plit
Polaribacter litorisediminis
Pathway
plit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K8354_04720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plit03019
]
K8354_04720
03400 DNA repair and recombination proteins [BR:
plit03400
]
K8354_04720
Enzymes [BR:
plit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K8354_04720
Messenger RNA biogenesis [BR:
plit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K8354_04720
DNA repair and recombination proteins [BR:
plit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K8354_04720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Mlp
Motif
Other DBs
NCBI-ProteinID:
UAM99130
LinkDB
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Position
complement(1069271..1071169)
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AA seq
632 aa
AA seq
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MISSKDILKKYWNHTAFRTPQEDIINAVLEQKDVIALLPTGGGKSICFQVPALIKEGVCL
VISPLIALMQDQVENLKSKNIKATTIVSGSSQDEMIALFDTIKFGNYKFLYISPERLQSV
FIQQKLKELTISFVAIDEAHCISEWGHDFRPSYRTIKILKELIPEVHFIALTATANKRVL
DDIRVNLALENPKIFRKSFYRQNLAYQIFTIEDKLLRLKQIFIKTKSPAIVYVSSRKKTA
EIARFLNANNFKSSFYHGGLKQSEKQNAFKNWMTESTPIMVATNAFGMGIDKPNVGVVIH
FDLPFSLENYIQESGRAGRNEKKSFAVLLKNENDIAIYKEQVKKSLPSISEVKEIHRKLY
QYFRIPNGEISEEMYQFQISEFCKTYQFSQKKVTTVCTILVNNGILETADTFNQKSSIIF
NQSSKNVISYAINNIDTTNFINSLLRTYTGLFQQEVKIDEFLLAKKNNSTSRRIIAHLER
LHEDKILLYHRVKTATEIRFLVPREDDRTINRCSKEIVQFLKQKEKKSADFLMYIQNNIT
CRNIQILAYFDETSTKKCGICDVCLSEKRKKSVNISSKILEVLQAKGTQSSQEIYQILNA
NEQDILIHLRALLSENKIQLNHQNKYQIKQEL
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgatttcatcaaaagacatattaaaaaaatactggaatcacactgcatttagaacgcct
caagaagacattataaatgcggttttagagcaaaaagatgtaattgccttgttgccaaca
ggaggcggaaagtcgatttgttttcaagtacctgccctgataaaagaaggagtttgcttg
gtaatttctccattgattgccttgatgcaagatcaagtcgaaaatttaaaaagtaaaaat
ataaaagcgacaacaattgtatcaggttcttctcaagatgaaatgattgcactttttgat
accattaaattcggaaattataagtttttatacatttcgccagaaagactacaatctgta
tttattcagcaaaaattaaaagaattaactattagttttgtggctattgatgaggcacat
tgtatttctgaatggggccatgattttagaccttcctacagaacgattaaaattctaaaa
gagctaattcctgaagtacattttattgcacttactgcaactgccaataaaagagtgtta
gatgatattagggtgaatcttgcattggaaaaccctaaaatttttagaaaatctttttac
agacaaaatttagcgtaccaaattttcacaatcgaagataaattattgcgtttaaaacaa
attttcattaagacaaaatcgcctgccattgtctatgtaagttcaagaaaaaaaacagca
gagattgctcgatttttaaatgccaacaattttaaaagtagtttttatcacggcggatta
aagcaatcagaaaaacaaaatgcttttaaaaattggatgacagaaagcaccccaattatg
gtggcaacaaatgcattcggaatgggaattgataaaccaaatgtgggtgttgtaattcat
tttgatttgcctttttctttagaaaattacattcaagaatctggaagagccggtagaaat
gaaaaaaaatcttttgctgtcttattaaaaaatgaaaatgatattgcaatttacaaagaa
caagtaaaaaaaagtttgccatcaatttctgaagtaaaagaaattcaccgaaaactatat
caatattttagaattccgaatggtgagatttcagaagaaatgtatcaatttcagatttct
gaattctgtaaaacatatcaattctcacaaaaaaaagtaacaactgtatgcactatttta
gtaaataatggtatcttagaaacagcagataccttcaatcaaaaatcatccataattttt
aaccaaagtagtaaaaacgtaatttcttatgctatcaataatattgatactactaatttt
ataaactcattattaagaacttacactggtctatttcaacaagaagttaaaatagatgaa
tttctattagcaaaaaaaaacaacagcacttctagacgaataattgcccatttagagcgt
ttacatgaagacaaaatactactatatcatcgtgtaaaaacagctacagaaattcggttt
ttagtgcctcgagaagatgatcgtacgatcaatagatgttctaaagagattgtacaattt
ctaaagcaaaaagagaaaaaatcagcagattttttaatgtacattcaaaataacattacc
tgtagaaacattcaaattttagcatatttcgatgaaacatctacaaaaaaatgtggtatt
tgtgatgtttgtttgtcagaaaaaagaaaaaaatctgtaaatatttcttcgaaaattcta
gaagttttacaggcaaaaggaacgcaatcgtcacaagaaatttatcaaattttaaacgcg
aacgaacaagacattttaatacatttgcgtgccctattatctgaaaataaaatacaacta
aatcatcaaaataaataccaaataaaacaagaattatga
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