Polaribacter litorisediminis: K8354_12055
Help
Entry
K8354_12055 CDS
T07786
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
plit
Polaribacter litorisediminis
Brite
KEGG Orthology (KO) [BR:
plit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plit03032
]
K8354_12055 (gyrB)
03400 DNA repair and recombination proteins [BR:
plit03400
]
K8354_12055 (gyrB)
Enzymes [BR:
plit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
K8354_12055 (gyrB)
DNA replication proteins [BR:
plit03032
]
Prokaryotic type
DNA Topoisomerases
K8354_12055 (gyrB)
DNA repair and recombination proteins [BR:
plit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K8354_12055 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UAM97053
LinkDB
All DBs
Position
2832519..2834456
Genome browser
AA seq
645 aa
AA seq
DB search
MSEDKKKEYDASSIQALEGMEHVRMRPSMYIGDVGIRGLHHLVYEVVDNSIDEAMGGYCD
AIDVVINEDNSITTKDNGRGIPVGIHKKEGVSALQVVMTKIGAGGKFDKDSYKVSGGLHG
VGVSCVNALSEHLTATVHKEGKVWQQEYSKGKSLYPVKTIGETDFTGTIVTFLPDKSIFK
QTTEFNYDTLATRMRELSYLNKGITITLTDKRTTDDEGNFISEVFHSDEGLPEFIKYLDS
TREQLIGSVISMEGEKNGIPVEVAMVYNTSYAENLHSYVNNINTHEGGTHLSGFRRGLTS
TLKKYADESGLLKNVKFEIAGDDFREGLTAIVSVKVQEPQFEGQTKTKLGNREVTSAVSQ
SVSEMLTNYLEENPNDAKIIVQKVILAATARHAARKAREMVQRKTVMSIGGLPGKLSDCS
ETDPAQCEIFLVEGDSAGGTAKQGRDRNFQAILPLRGKILNVEKAMQHKVFENEEIKNMF
TALGVSIGTEEDPRALNLSKVRYHKVVIMCDADVDGSHIATLILTFFFRYMREMVEQGYI
YIATPPLYLVKKGQKREYAWDDNQRDIIAQKYGGGVSIQRYKGLGEMNAEQLWDTTMNPE
FRTLRKVVIDSPTEADRVFSMLMGDEVPPRRDFIERNAKYANIDV
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagataaaaaaaaggaatatgatgcttccagtattcaggcattagaaggcatg
gagcatgtaagaatgcgtccgtcgatgtatattggggatgttggcatccgtggtttacat
catttagtttatgaagttgtagataattctattgatgaagcaatgggtggttattgtgat
gccattgacgtagttattaatgaagacaattctattacaaccaaagataatggtcgtgga
attcctgttggcattcataaaaaagaaggggtttctgcattacaagtagtcatgacaaaa
attggagctggtggtaaatttgataaagactcctataaagtttctggaggtttacacggt
gtaggtgtaagttgtgtaaatgcactatcagagcacttaacagctacggtgcataaagaa
ggcaaagtttggcaacaagaatattctaaaggaaaatcgctttaccccgtaaaaacaatt
ggagagacagattttactggtacaattgttacttttttgccagacaaatctatttttaaa
caaaccactgaatttaactatgatacattagcaacacgtatgcgtgaattatcatatttg
aataaaggaattacaataacgttaacagataaaaggactaccgatgatgaaggtaatttt
atttctgaagtttttcatagtgatgaaggactacctgaatttattaaatatttagattct
acaagagagcaattaatcgggtctgtaatttctatggaaggcgagaaaaacggaattcct
gtagaggttgcgatggtgtataatacttcgtatgctgaaaatttacattcttatgtaaac
aatatcaacacgcatgaaggaggaacacacctatccggttttagacgtggtttaacaagt
acgttaaaaaaatatgcagatgaatctggattattaaaaaatgtaaagtttgaaattgcc
ggtgatgacttccgtgaaggattaacagcaattgtttctgtaaaagtacaagagcctcaa
tttgaagggcaaacaaaaacaaaattaggaaacagagaagttacttctgcagtgtctcaa
tctgtttcagaaatgttaacaaattatttagaagaaaatcctaatgatgcaaaaataatt
gttcagaaagtaattttagcagcaaccgcaagacatgcagcacgaaaagccagggaaatg
gtgcaacgtaaaacggtaatgtctatcggtggtttacctggtaaattatctgactgctct
gaaacagatcctgctcaatgtgaaatattcttagttgagggagattctgcaggcggaaca
gccaaacaaggaagagatagaaactttcaagccattctaccacttcgaggaaagattttg
aacgtggaaaaagccatgcaacataaggtttttgaaaatgaagaaattaaaaatatgttt
actgctttaggagtttctataggtacagaagaagacccaagagccttaaacttatcaaaa
gttcgttatcacaaagttgttattatgtgtgatgccgatgtagatggatcacatattgct
accttaatattaacatttttctttagatatatgcgagaaatggttgagcaaggctatatt
tatattgccactcctcctttatatttagtcaaaaaaggccaaaaaagagaatatgcttgg
gacgacaatcagcgtgatattatcgctcaaaagtatggtggcggggtcagcatccaaaga
tataaaggtttaggagaaatgaatgctgaacaactttgggataccaccatgaatcctgaa
tttagaactttgcgtaaggtagttattgatagccctacagaagctgatagagtattttct
atgttaatgggagatgaagtaccaccaagaagagatttcattgaaagaaatgccaagtat
gcgaatattgatgtataa
DBGET
integrated database retrieval system
