Polaribacter litorisediminis: K8354_12695
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Entry
K8354_12695 CDS
T07786
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
plit
Polaribacter litorisediminis
Pathway
plit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K8354_12695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plit03019
]
K8354_12695
03016 Transfer RNA biogenesis [BR:
plit03016
]
K8354_12695
Enzymes [BR:
plit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
K8354_12695
Messenger RNA biogenesis [BR:
plit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K8354_12695
Transfer RNA biogenesis [BR:
plit03016
]
Prokaryotic type
tRNA degradation factors
K8354_12695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
PNPase
S1
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
UAM97172
LinkDB
All DBs
Position
2980587..2982839
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AA seq
750 aa
AA seq
DB search
MIPKVFREVIDLGDGREISIETGKLAKQAHGSVVVQSGKCMMLCTVVSNYEQKDLGFLPL
TVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYTAETQVMIQLMS
HDENVMPDAMAGLAASAAIQLSDFPFECAISEARVGRINGEFIINPTRAQLAESDIDMMI
GASADSVMMVEGEMDEISEEEMADAIKFAHEAIKIQCAAQLRLAEAFGKKETREYEAARE
DKDLEQKVHDMAYDKVYAIAEAGSSKHERSAAFKEIKESIKATFSEEELAEYGGLVSEYY
RKAEKAAIRDLTLNVGLRLDGRKTDEIRPIWCEVDYLPSVHGSSIFTRGETQALATVTLG
TSREANKIDMPSYEGEENFYLHYNFPPFCTGEARPIRGTSRREVGHGNLAQRGLKGMIPD
NCPYTVRVVSEVLESNGSSSMATVCAGTMALMDAGVQMIRPVSGIAMGLISDAESGKYAV
LSDILGDEDHLGDMDFKVTGTSEGITACQMDIKVKGLSYEILVNALKQAREGRLHILGKI
TDTISTANEDVKEHAPKMVNRRIPNDLIGAFIGPGGKHIQELQKETGTTIVITEDAVTEE
GIIEILGTDPAGIETVITRIESMLFKPQVGSAYEVKVIKMLDFGAVVEYMEAPGNEVLLH
VSELAWERTENVTDVVNMGDIFDVKYFGLDPRTRKEKVSRKALLTKPEGYVARPPRDDKR
SGGRDSRGSRDNRGRDDRKPRAPRTPRKEE
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgattccaaaagtatttagagaggttatagaccttggtgatggtagagaaatttctatc
gaaacgggaaaattagcaaaacaagcccacggaagtgttgttgtacaatccggaaaatgt
atgatgttgtgtacagtagtttccaattatgaacaaaaagatcttggttttttaccatta
acggtagattatagagaaaaatttgcagcggcaggtcgttatcctggtggtttctttaaa
agagaagcaagaccaagtgatggcgaagtattaacaatgcgtttagtagaccgtgttcta
cgtccgttattccccaaagattacacagcagaaacacaagtaatgattcagttaatgtct
catgacgaaaacgttatgccagatgccatggcaggtttagcagcatctgcagcgatacaa
ttatcagattttccatttgaatgtgcaatctctgaagcaagagttggtcgtatcaatggc
gaatttatcatcaacccaacaagagcacaattagcagaatctgatatcgacatgatgatt
ggtgcttccgcagattctgtgatgatggtggaaggtgaaatggatgaaatttctgaagaa
gaaatggcagacgctattaagtttgcacacgaagctattaaaatacaatgtgctgctcaa
ttaagattagctgaagcatttggtaaaaaagaaactcgggaatacgaagctgccagagaa
gataaagatttagagcaaaaagtgcatgacatggcatacgataaagtatatgctatcgca
gaagctggatcttctaaacatgaaagatctgctgcatttaaagaaataaaagaaagcatt
aaagctactttttctgaggaagaattagcagagtatggtggtttagtttctgagtattat
cgtaaagccgaaaaagctgccattagagatttaaccttaaatgtcggtttgcgtttagat
ggtcgtaagacagatgaaattagaccaatttggtgtgaagtagattatttaccatccgtg
catggttcgtcaatctttactcgtggagaaacacaagctttagctaccgttaccttaggt
acttctagagaagcaaataaaatagacatgccatcttacgaaggtgaagaaaatttctat
ttacattacaacttccctcctttttgtacaggtgaagcaagaccaattcgtggaacatct
cgtagagaagttggtcacggtaatttagcgcaacgtggtttaaaaggaatgattcctgat
aattgtccctataccgtaagagtagtttctgaagttttagaatctaatggttcttcttct
atggcaactgtttgtgctggtacaatggcattgatggatgcaggtgtacaaatgataaga
cctgtttctggtattgcaatgggattaatttctgatgcagaatctggaaaatatgccgta
ttatctgatattttaggtgatgaagatcacttaggagatatggattttaaagtaactggt
acttctgaaggaattactgcttgccaaatggatattaaagtaaaaggactaagctacgaa
attttagtgaatgcactaaaacaagcgcgagaaggtcgtttacatattttaggaaaaatt
acggataccatttctactgcaaatgaagatgtaaaagaacatgcacctaaaatggttaac
agacgtataccgaatgatttaattggtgcatttattggaccaggaggaaaacatattcaa
gaattacagaaagaaacaggaactacgatcgtaattaccgaagacgctgttaccgaagaa
ggaattattgaaattctaggaacagatccggcaggaattgagacagtaattacccgtatt
gagtcgatgctttttaaacctcaagtaggaagcgcttatgaagtaaaagtaattaaaatg
ttagattttggcgctgtagtagaatatatggaagcaccaggaaacgaagttttattacat
gtttctgagctagcttgggaacgcactgaaaacgttactgatgttgtaaatatgggcgat
atttttgatgtgaagtattttggtttagacccaagaactcgtaaagaaaaagtttctcgt
aaagcattgttaacaaaaccagaaggctatgtagcaagaccaccaagagatgacaaacgt
tctggcggacgagatagcagaggaagtagagataatcgtggacgtgatgatagaaaacca
agagcaccaagaacacctaggaaagaagaataa
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