Polaribacter litorisediminis: K8354_18065
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Entry
K8354_18065 CDS
T07786
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
plit
Polaribacter litorisediminis
Pathway
plit03410
Base excision repair
plit03430
Mismatch repair
plit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
plit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K8354_18065 (recJ)
03430 Mismatch repair
K8354_18065 (recJ)
03440 Homologous recombination
K8354_18065 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plit03400
]
K8354_18065 (recJ)
DNA repair and recombination proteins [BR:
plit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
K8354_18065 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
K8354_18065 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K8354_18065 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UAM98156
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All DBs
Position
4218248..4219933
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AA seq
561 aa
AA seq
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MRWTIKPQPDKETILKLAKDLKVDTTIATILCQRNIETFEDAKNYFRPNLKNIHDPFLMK
DMDVAVARIETAIANNENILIYGDYDVDGTTAVSLVSSYLKTLTPNIATYIPDRYAEGYG
ISYLGIDFAEDNDFSLIIALDCGIKAIEKVEYAKEKNIDFIICDHHKPGKKIPSAVAVLN
AKREDCNYPFDELCGCGVGFKLIQALGVSRNQTIEYFMPYLDLVATAIAADIVPMNGENR
TLAYFGLQVINQNPRNGIKAIIHHIKKTILTITDVVFIIAPRINAAGRIKHGNYAVQLLT
EMDFESAVEFAAAIEIFNADRKDLDKRITEEALIQIIDNEEEQRFSSVVFQEDWHKGVIG
IVASRLIEKYYRPTLVFTKSGDKLAASARSVKDFDVYNALEACSEFIEQFGGHKYAAGLT
LLPENYEKFKNKFEEVVAKTIDKKLLTPEIAIDAEIELSEITPKFFRILQQMAPFGPMNM
KPTFTSICVRDNGYGKQVGADKTHLKLNVFQGDNKQNYNAIGFNLGDKMAFVQNDFDIVY
ALDENEWNGHKSVQLVLKDLK
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagatggaccataaaaccacaaccagacaaggaaacaatccttaaattagcaaaagat
cttaaagttgataccacaatagcaaccattctttgtcaaagaaatattgaaacctttgag
gatgctaaaaattactttcgtcccaatctaaaaaatattcatgatccttttttaatgaaa
gatatggatgttgccgttgccagaattgaaactgccattgctaacaatgaaaatatttta
atttatggtgattatgatgtagatggtacaactgccgtttctttagtttcttcttattta
aagacactgaccccaaacattgctacctatattcctgatagatatgcagaagggtatggt
atttcttatctaggaattgattttgccgaagacaatgatttttctttaattattgcgtta
gactgtggtataaaagccattgaaaaagtggagtacgccaaagagaaaaatatcgacttt
ataatttgtgatcatcataaacctggcaaaaaaattccgagcgctgttgctgttttaaat
gcaaaacgagaagattgtaactatccttttgatgaattgtgcggctgtggtgttgggttt
aagctcatacaagccttaggagtttcaagaaatcaaaccatagaatactttatgccttat
ttagatttggtagctactgcaattgcggcagatattgtaccgatgaacggcgaaaacaga
accttagcatattttggtttgcaagtcatcaatcaaaacccaagaaacggcattaaagcc
attattcatcatattaaaaaaacaatacttaccattacggatgttgtttttatcattgcg
cccagaattaatgccgccggaagaataaaacatggtaattacgcagttcaacttttaacg
gaaatggattttgaatctgctgttgaatttgctgccgccattgaaatttttaatgcggat
agaaaagatttagataaaagaattacagaggaagctttaattcagattattgataatgaa
gaagaacagcgtttttcatccgtagtttttcaagaagattggcacaaaggtgtcatcgga
attgtggcttctcgtttgatagaaaaatactacagacctactttggtctttaccaaaagt
ggcgataaattagccgcttctgcccgctcggtcaaagattttgatgtttataatgcatta
gaagcatgttccgaatttatagaacaatttggcggtcataaatatgcagcgggtttaact
ttattgcctgaaaactacgaaaaatttaaaaacaagtttgaagaagttgtagcgaaaacc
atcgataaaaaattattgacaccagaaattgcgattgatgcagaaattgaactctcagaa
attacaccgaaattttttagaatacttcagcaaatggcgccctttggacctatgaatatg
aaacctacttttacctctatttgtgttagagacaatggttatggcaaacaagtaggagcg
gataaaacacatttaaaattgaatgtttttcaaggtgataataaacagaattacaatgct
attggttttaatttgggggataaaatggcttttgtacaaaatgattttgatatcgtgtac
gctttagatgaaaacgaatggaatggacataaatctgtacaattggttttaaaggatttg
aaataa
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