Polaribacter litorisediminis: K8354_18555
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Entry
K8354_18555 CDS
T07786
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
plit
Polaribacter litorisediminis
Pathway
plit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
plit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K8354_18555 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plit03400
]
K8354_18555 (mfd)
Enzymes [BR:
plit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K8354_18555 (mfd)
DNA repair and recombination proteins [BR:
plit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K8354_18555 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Nop
Motif
Other DBs
NCBI-ProteinID:
UAM98247
LinkDB
All DBs
Position
complement(4335976..4339320)
Genome browser
AA seq
1114 aa
AA seq
DB search
MSKQYIVNQYQKSVYISQINKALQQNKNHFQISNLVGSSLSFVISETFKRADKPYLLIFN
DKEEAAYYLNDLEQLLGDKNVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSRKKPAI
IVTYPTALFEKVVTKKELDNNTLKIALGEHLSLDFVNEVLFEYKFKRVDFVTEPGDFSVR
GGIIDVFSFANDEPYRIEFFGDEIDSIRSFDVETQLSKEKLKKVAIMPNVEHKTLQENRE
SFLKYISSNTIVFAKNLDLLVGNLNKFYEKANEAFKDLSKEIKHTEPSELFCDGNFIKNQ
LQDFTLVDFGTHNTQKVSKTLQKIDFNTIPQPSFNKQFNLLIDNLNEYHKAGFTNYIFCA
NDQQAKRFHDIFDDADQEVHYETVVFPLYQGFIDVDQKLVCYTDHQIFERYHKFRLKNGY
AKKQAITLQELTKLEIGDYVTHMDHGIGKFGGLQKIDVQGKKQEAIKLVYGERDILYVSI
HSLHKISKFNGKDGKAPKIYKLGSGAWKKIKQKTKARVKHIAFNLIQLYAKRKLEKGFAY
GPDTHIQHELEGSFMYEDTPDQFTATQDVKTDMEKTQPMDRLVCGDVGFGKTEVAVRAAF
KAVDNGKQVAILVPTTILAFQHYKTFTERLKDFPVSIDYLNRFRTAKQKTEAINGVNDGS
IDIIIGTHQLTNKRLQFKDLGLLIIDEEQKFGVAVKDKLKTLKENVDTLTLTATPIPRTL
QFSLMAARDLSVIKTAPPNRHPIESHVIRFSEETIRDAISYEISRGGQIFFIHNRIENIK
EVAGLLQRLIPNAKIGIGHGQMEGKKLEGLMLSFMNGDFDVLVSTTIIESGLDVPNANTI
FINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYHMMTDDARKRIEALVLFSDLGSGI
NIAMKDLEIRGAGDLLGGEQSGFINDIGFDTYQKILQEAIEELKENEFKELYPTDTSKPK
EFVKEVTIDTDFEILFPDDYVNSITERLSLYSKLGELKTEAELQVFETEIIDRFGKIPTQ
VKDLLDSVRIKWLAKALGLEKIILKQKRMIGYFVADQQSEFYQTSAFSSMLKYVQQNGKS
CVMKEKQTKNGLRLLITFIRIDTVKTALHILQKI
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaagcagtatattgtaaatcaatatcaaaaatctgtgtatatttcgcagataaat
aaagcacttcaacaaaacaaaaaccattttcaaatatcgaacttggttggatcttcattg
tcttttgtaatttctgaaacctttaaacgagcagacaaaccttaccttttaatatttaat
gataaagaagaagctgcgtattatttaaatgatttagaacaacttttaggtgataaaaat
gtgcttttttatccaggttcttatagaagaccttatcaaatagaagaaacagataacgcg
aacgttttattaagagcagaagttttaaatagaatcaactctagaaaaaaacctgccata
attgttacgtatccaacggctttatttgaaaaagtagttacaaaaaaagaactagataac
aataccttaaaaattgcgcttggcgaacatttatctttagattttgtaaacgaggtttta
ttcgaatataaatttaaacgtgtagattttgttacagaaccaggagatttttcagtaaga
ggcggaattatagatgttttttcttttgccaatgacgaaccttacagaatagaatttttt
ggtgatgaaattgatagcatcagatcttttgatgtagaaacacaactttctaaagaaaaa
ctgaaaaaagtggcaattatgccaaatgtagagcataaaacacttcaggaaaatagagaa
agttttctaaaatacatttcatcaaacaccattgtttttgcaaaaaacttagacctatta
gtaggaaatctaaacaaattctatgaaaaagcgaatgaagctttcaaagatttatccaaa
gaaataaagcacaccgaacccagtgaattattctgtgatggtaattttattaaaaatcag
ttacaagattttacattggtagatttcggaactcataacacccaaaaagtttcaaaaacc
ttacagaaaattgattttaatacaattccgcaaccttcttttaataaacaattcaattta
ttaattgataatttaaacgaatatcacaaagcaggttttaccaattatatattttgtgcc
aatgaccaacaggcaaaacgttttcatgatatttttgatgatgctgatcaagaagtgcat
tatgaaactgttgtttttccgctatatcaaggttttattgatgttgatcaaaaattagtt
tgttatacagatcatcaaatttttgagcgttatcataaattccgattaaaaaatggatac
gcaaaaaaacaagccattactttacaagaactcaccaaactagaaattggtgattatgta
acccacatggatcatggaattggaaaatttggaggtttacaaaaaattgatgttcaagga
aaaaagcaagaagcaataaaacttgtttatggagaaagagatattttatacgtaagcatt
cactcgcttcataaaatttctaaatttaacggaaaagacgggaaagctcctaaaatatac
aaattagggtctggtgcttggaaaaaaataaaacaaaaaacaaaagcaagagttaaacat
atagcgtttaatttaattcaattatacgccaaaagaaaattagaaaaaggctttgcttat
gggccagatactcatattcagcatgagttagaaggaagttttatgtacgaagatacacca
gatcaatttactgctacgcaagatgtaaaaacggatatggaaaagacgcaacccatggac
agattggtttgtggtgatgttggttttggtaaaacagaagttgccgtaagagctgctttt
aaggctgtagacaatggcaaacaagttgccattttagttccgactactattttagctttt
cagcattataaaactttcacagaacgcttaaaagattttcctgttagcattgattattta
aaccgttttagaacagcaaaacaaaaaactgaagctataaatggtgtaaatgatggctct
atagatattatcattggcacacatcaactcaccaataaacgtttacaatttaaagattta
ggcttattaattattgatgaagagcagaaatttggcgtcgctgtaaaagacaaattaaaa
accttaaaagaaaatgtagatacattaacactaacggcaactccaattccgagaacattg
caatttagtttgatggctgcaagagatttatctgttataaaaacagcacctcccaacaga
catcctattgagagtcatgttattcgtttttcggaagaaaccattagagatgccatttct
tatgaaatttcgagaggtggccaaattttctttattcataatagaattgaaaatattaaa
gaagtggctggtttgttacaaagattgataccgaacgcgaaaattggtattggtcacgga
caaatggaaggcaaaaaactagaaggtttaatgcttagttttatgaacggagattttgat
gttttggtttctaccacaattatagaaagtggtttagacgtgccaaatgcaaacaccatt
tttattaataatgccaataattttggcttgtcagatttacaccaaatgcggggtagagtt
ggacgaagcaataaaaaagcgttttgttattttataacgccaccttatcatatgatgact
gatgatgccagaaaacgtattgaagccctagttttattttctgatttaggcagtggaatt
aatattgccatgaaagatttagaaattcggggtgcaggagatttattaggtggcgaacaa
agcggctttatcaatgacattggttttgatacctatcaaaaaatactacaagaagccatt
gaagaactcaaagaaaatgagtttaaagaattgtacccaacagatacatctaaacccaaa
gaatttgttaaagaggttactattgataccgatttcgaaattttatttcctgatgattat
gtaaattctattacagaaagattaagtttatatagtaaattaggtgaattaaaaacagaa
gcagaactacaagtttttgaaactgaaatcatagaccgctttggcaaaatccctacacag
gttaaggatttattagattcagtgagaataaaatggctagcgaaagcgttaggcctagaa
aaaattattctaaaacaaaaacgtatgattggatattttgtagcggatcaacagagtgaa
ttttatcaaacttcggctttttctagcatgttgaaatatgtgcagcaaaatggaaaaagt
tgtgtgatgaaagaaaaacaaactaaaaacggtttgcgtttattgattacttttattagg
attgataccgtgaaaactgctttacatattttacagaaaatttaa
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