Purpureocillium lilacinum: 28882640
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Entry
28882640 CDS
T05029
Symbol
PLICBS_001346
Name
(RefSeq) suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
plj
Purpureocillium lilacinum
Pathway
plj03013
Nucleocytoplasmic transport
plj03015
mRNA surveillance pathway
plj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
28882640 (PLICBS_001346)
09122 Translation
03013 Nucleocytoplasmic transport
28882640 (PLICBS_001346)
03015 mRNA surveillance pathway
28882640 (PLICBS_001346)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plj03019
]
28882640 (PLICBS_001346)
03041 Spliceosome [BR:
plj03041
]
28882640 (PLICBS_001346)
Enzymes [BR:
plj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
28882640 (PLICBS_001346)
Messenger RNA biogenesis [BR:
plj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
28882640 (PLICBS_001346)
Spliceosome [BR:
plj03041
]
Complex C
Other components
EJC/TREX
28882640 (PLICBS_001346)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
28882640 (PLICBS_001346)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
Motif
Other DBs
NCBI-GeneID:
28882640
NCBI-ProteinID:
XP_018183116
UniProt:
A0A179HVJ0
LinkDB
All DBs
Position
Unknown
AA seq
438 aa
AA seq
DB search
MSHEEDLIDYSDEEIGGNEAPAAGAAAGSNGKKTDLAAGNDVDKKGSYVGIHSTGFRDFL
LKPELLRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPIN
GEVSVVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDVETLKNKDTCPHII
VGTPGRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPTQKQVMMFSA
TLSDAIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYVKLEEKEKNRKLNELLDDLQFNQ
VIIFVKSTIRATELDKLLRECNFPSIAVHSGVSQDERIKRYKEFKEFKKRICVATDVFGR
GIDIERINLAINYDLPADASSYLHRVGRAGRFGTKGLAISFVSSDQDQEVLKEIEKRFEV
ALPEFPKEGVDASTYMAS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaagaggatctcatcgactactccgacgaggagatcggcggcaacgaggcg
cctgccgccggcgccgccgccggttctaacggcaagaagaccgaccttgctgctggcaac
gatgtggacaagaagggcagctatgtcggcatccactcgactggattccgcgactttctt
ttgaagcccgagcttctccgcgctattggcgactgtggcttcgagcatccatcggaggtc
cagcaaacttgtattccgcaggcgcttctcggtggcgacattatctgccaggccaagtcc
ggtctgggaaagacggctgtcttcgttctggccacgctccagcaggttgagcccatcaac
ggcgaggtctccgtggtggtcatgtgccacactcgtgagctggcctaccagattcgcgac
gagtacaaccggttcagcaagtacatgcctgacatcaagacgggcgttttctacggtggt
actcccatcaagacggacgtggagaccttgaagaacaaggatacgtgcccccacatcatc
gtgggcaccccaggccgcctcaaggccctcgttcgcgacaaggccctccgcctcggcagc
gtgcgtatcttcgtcctcgacgaatgcgacaagatgcttgaccagcctgacatgcgtacc
gacgtccaggacgtcttccgcgccactccgacccagaagcaggtcatgatgttctcggcc
acgctttcggatgctatcaagcctatctgccgcaaatttatgcagaacccgacggagcat
tacgtcgatgaggacaccaagctcacccttcacggcctccagcagtattacgtcaagctg
gaggaaaaggagaagaaccggaagctcaatgagcttcttgatgaccttcagtttaaccag
gtcatcattttcgtcaagagcacgatccgtgctaccgagctcgacaaactccttcgggag
tgcaacttcccttccatcgccgtccactctggcgtgagccaggatgaacgtatcaagcgt
tacaaggagtttaaggagtttaagaagcgcatctgcgtcgcgacggatgtcttcggtcgt
ggtatcgacattgaacggatcaacctggccatcaactatgaccttcctgcagatgccagc
tcgtatcttcaccgagtcggccgtgctggccgtttcggtaccaagggtctcgccatctcg
ttcgtgagctccgaccaggaccaggaggtcttgaaggagattgagaagcgtttcgaggtc
gccttgcctgagtttcccaaggagggcgtggatgccagcacctacatggcgtcttaa
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