Purpureocillium lilacinum: 28889482
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Entry
28889482 CDS
T05029
Symbol
PLICBS_008083
Name
(RefSeq) ATP-dependent RNA helicase mtr4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
plj
Purpureocillium lilacinum
Pathway
plj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
28889482 (PLICBS_008083)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plj03019
]
28889482 (PLICBS_008083)
03041 Spliceosome [BR:
plj03041
]
28889482 (PLICBS_008083)
03009 Ribosome biogenesis [BR:
plj03009
]
28889482 (PLICBS_008083)
03016 Transfer RNA biogenesis [BR:
plj03016
]
28889482 (PLICBS_008083)
Enzymes [BR:
plj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
28889482 (PLICBS_008083)
Messenger RNA biogenesis [BR:
plj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
28889482 (PLICBS_008083)
Spliceosome [BR:
plj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
28889482 (PLICBS_008083)
Complex C
U4/U6.U5 tri-SnRNP related factors
28889482 (PLICBS_008083)
Ribosome biogenesis [BR:
plj03009
]
Eukaryotic type
Pre-60S particles
Helicases
28889482 (PLICBS_008083)
Transfer RNA biogenesis [BR:
plj03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
28889482 (PLICBS_008083)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Helicase_dom4_arc
nSTAND3
AAA_22
Glyco_hydro_65C
AAA_16
Motif
Other DBs
NCBI-GeneID:
28889482
NCBI-ProteinID:
XP_018177612
UniProt:
A0A179HHD4
LinkDB
All DBs
Position
Unknown
AA seq
1095 aa
AA seq
DB search
MDDMFDVFEGKPGRQSDSEEEQVPQRPRNRDKTKKRKADEAMNGAATQEKQPAEDEDMDA
NETKSKDDESDEDESDTPSQQDKKRRKKEDGVGPVLTDTFQTAESREVAGATTLLPQESS
LVLSHNIQHQVALPPDLDYEYVPLSEHKSPEEPARTWNFKLDPFQSLSVASIEREESVLV
SAHTSAGKTVVAEYAIAQCLKRNQRVIYTSPIKALSNQKYRDFDAIFGDVGLMTGDVTIN
PTASCLVMTTEILRSMLYRGSEIMREVGWVVFDEIHYMRDKTRGVVWEETIIMLPDKVRY
VFLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFYPCGGKGARMVVDEKGNFN
ESNFNSVMQEVEDRKGAESNDINAKLKGKGKNKKTNKGGGPDEGSDIYKIIKMTIKKKFN
PVIVFNFSKREVENLAIKVGNLDFNDDSEQAMVEKVFRSAIDSLSEEDRELPQIVHLLPL
LKRGVGVHHSGLLPILKETIEILFQESLIKVLFATETFSIGLNMPAKTVIFTQVTKWDGV
KRRPITSSEYIQMAGRAGRRGLDARGLVLMMIDDKLEPEVAKEIVTGHQDRLNSAFYLGY
NMILNLLRIEAISPEFMLERCFHQFQNAASVPSLEKDLMALQQERDSLAIPDEATIKDYY
QIRQQLNTYTADMRAVIQHPQYSLEYLQPGRLVQIYNPKVSPDNVAGGQDFGWGVVVKHE
PRKAPKLGEPEHAPQESVIVNVLLPLAASSSSVYPGQPSAEMQAGLVPANGDEEVIYETV
PCLLSCVKAISQIRIFLPKDGLRTDQDKETAFKSLSEVKRRFPDGVPILDPLENMDITDE
SFKKLLRKIEVLESRLLANPLHLSPLLPSLWDQYHAKMQVSEKVKEKKKAIAKAHSIAQM
DELKSRKRVLRRLGFINDAEVVQLKARVACEISSTEGHELLLSELLFDRFFNELTPEMIA
SILSCFIFDEKVETQALKEELQKPYREVLAKARIVAKVSQECKLDVNEEEYVQSLKWQLM
ETVYAWANGRPFSEICKMTNTYEGSLIRLFRRLEELLRQMAQAAKVMGNDDLTKKFEESL
QKVRRDIVAAQSLYL
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggatgacatgttcgatgtgtttgagggcaagcctggccgtcaaagcgacagcgaggag
gagcaggtgccgcagcgaccccggaaccgcgacaagaccaagaagagaaaggcggacgag
gccatgaatggcgcagcgacccaggagaagcaaccggccgaggatgaggatatggacgcc
aacgagacgaagtccaaagacgacgagtccgacgaagacgaatcggacacacccagccag
caagacaagaagcggaggaaaaaggaagacggcgtaggacccgtcttgacggataccttt
cagacggccgagtcgagagaagtcgccggcgccacgacactgctgccacaggaatcctct
ctcgtgctgtcacataacatccagcatcaagtcgcgctgcctccggacctggactacgag
tacgtgccactgtcggagcacaagtccccggaagagccggcgcgcacgtggaactttaag
ctcgaccctttccagagcctgtcagtggcgtcgattgagcgcgaggagagtgtcctggtg
tcggcgcacacgagtgccggcaagacggtcgtcgccgagtacgccatcgcccagtgtctc
aagcgaaatcaaagggtcatctacacgagtcctatcaaggctctgagtaaccaaaagtat
cgagactttgacgccatttttggcgacgtcggcctcatgacgggcgatgtcaccatcaac
cccacggccagctgcctggtcatgacgacggagattctgcggtccatgctgtaccgcggt
tccgagatcatgcgcgaggtgggatgggtcgtgttcgacgagattcactacatgcgcgac
aagacccgcggtgtcgtttgggaggagaccatcatcatgcttcccgacaaggtccgctac
gttttcctctccgccaccattcccaacgccttccagttcgccgaatggatcgccaagatc
caccaccaagcgtgccacgtcgtctacacggatttccgaccgacgccgctgcaaaactac
ttctacccctgcggcggaaagggcgcgcggatggtggtcgacgagaagggcaacttcaac
gagagcaacttcaacagcgtcatgcaggaagtggaggaccgcaagggcgcggaatcaaac
gacatcaacgccaagctcaagggcaagggcaagaacaagaagacgaacaagggcggcggc
cccgacgaaggatcggacatctacaagatcatcaagatgactatcaagaaaaagttcaac
cccgtcatcgtcttcaacttcagcaagagggaggttgagaaccttgcgatcaaggttggc
aatctggacttcaacgacgactcggagcaggccatggtcgaaaaggtcttcaggagcgcc
attgacagcttgtcagaagaggaccgcgagctgccccagattgtgcacttgctaccgctg
ctcaagcgcggcgttggtgtccatcattccggcctgctgcccatcttgaaggagacgatc
gagattctcttccaagagtcactgatcaaggtgctcttcgccacagagaccttctccatc
ggcctgaacatgccggccaagacggtcattttcacacaggtcacaaagtgggacggcgtc
aagaggcgacccatcacttcgtccgagtacattcagatggcgggccgagctggacgacgt
ggtctcgacgcccgcggtcttgttctgatgatgattgacgacaagctggagccggaggtg
gccaaggaaatcgtcacgggacaccaggacagactgaactcggccttttacctgggctac
aacatgattctgaacttgttgcgaatcgaggccatctcgcccgagtttatgctcgagcgc
tgcttccaccagttccagaacgcagcgagcgttccgtctctggaaaaggatctcatggcc
ttgcaacaagagcgggactccctggcgatcccagacgaggccaccatcaaagactactat
cagattcgtcaacagctcaacacatacacggcagacatgcgggccgtcattcaacaccct
cagtacagcctcgagtatttgcagcccggtcggctggtgcaaatctacaaccccaaggtg
tcgcccgataacgtggccggcggtcaggactttggctggggcgtggtggtcaagcacgag
ccccgcaaggcgcctaagctcggtgagccggaacatgcgccgcaggagtctgtcattgtg
aatgtcttgctgcctcttgcggcgtccagctcctcggtgtatccgggccagccttcggca
gagatgcaagccggcctggtgccggccaacggggacgaagaggtcatttacgagacggtg
ccgtgcctgctgagctgcgtcaaggccatcagccagattcgcatctttctgcccaaggac
ggcctgaggactgatcaggacaaggaaactgccttcaagtctctatccgaagtcaagcgc
aggttccctgatggcgtgccgatcctcgacccgctggagaacatggacattacggacgaa
tccttcaagaagcttctgcgcaagatcgaggtgctcgagtctcggctgttggccaacccg
ctgcacctgtcgccgctgctgccttcgctctgggaccagtaccacgccaagatgcaagtg
tccgagaaggtcaaggagaagaagaaggccatcgccaaggcgcacagcatcgcgcagatg
gacgagctcaagtcgcgcaagcgtgtcctgcgtcgtctcggattcatcaacgacgccgag
gtcgtgcagctcaaggcgcgcgtcgcgtgcgagatctcttcgaccgaaggccacgagctg
ctcttgtcggagctactgttcgaccgcttcttcaacgagctgacgccggaaatgattgcc
tccatcctgagctgcttcatctttgatgaaaaggtggagacgcaggccctcaaggaggag
ctgcagaagccttaccgcgaggtcctggccaaggcacgcatcgtggccaaggtcagccag
gaatgcaagctggacgtgaacgaggaggagtacgtgcagagcctgaagtggcagttgatg
gagacggtctacgcatgggctaacggccgaccgttctccgagatctgcaaaatgacaaac
acgtacgagggctcgcttatccgcctgttccgccgtttggaggagctcctgcggcagatg
gcccaggccgccaaggttatgggcaacgacgacctcaccaagaagtttgaggagagtctg
cagaaggtgcgcagggacatcgtggccgcgcagagtctgtacctgtag
DBGET
integrated database retrieval system
