Plantactinospora sp. KBS50: CIK06_04220
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Entry
CIK06_04220 CDS
T05048
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
plk
Plantactinospora sp. KBS50
Pathway
plk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CIK06_04220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plk03021
]
CIK06_04220
03400 DNA repair and recombination proteins [BR:
plk03400
]
CIK06_04220
Enzymes [BR:
plk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CIK06_04220
Transcription machinery [BR:
plk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CIK06_04220
DNA repair and recombination proteins [BR:
plk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CIK06_04220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
Motif
Other DBs
NCBI-ProteinID:
ASW53560
UniProt:
A0A248YJ23
LinkDB
All DBs
Position
906737..907759
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AA seq
340 aa
AA seq
DB search
MLISQRPSLSEESINDTRSRFAIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIKIDGVL
HEFTTIPGVKEDVVELVMNIKELCVSSEHDEPVSMYLRKQGPGDVTAGDIQPPAGVSVHN
PDLKLATLNGKGRLDMELTVERGRGYVTAAQNKQAGAEIGRIPVDSIYSPVLKVTYRVEA
TRVEQRTDFDRLVIDVETKASIGPRTALASAGSTLVELFGLARELDETAEGIDIGPSPQD
AQLAADLALPIEELDLTVRSYNCLKREGINTVGELIGRTEADLLDIRNFGQKSIDEVKMK
LAGMGLGLKDSAPNFDPAQVVDTFGEADYDTDDYRETEQL
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgctcatcagtcagcggccgtctctgtccgaagagtcgatcaacgacacccgctcccgg
ttcgccatcgagccgcttgagccggggttcggctacaccctgggcaactcgctccggcgt
accctgctctcctccatccccggcgccgcggtcacctcgatcaagatcgacggtgtgctg
cacgagttcaccacgatcccgggcgtcaaggaggacgtggtcgagctcgtcatgaacatc
aaggagctgtgcgtcagctccgagcacgacgagccggtcagcatgtacctgcgcaagcag
ggccccggcgacgtcaccgccggtgacatccagccgccggccggcgtctcggtgcacaac
ccggacctgaagctggccaccctgaacggcaagggccggctcgacatggagctgaccgtc
gagcggggccgcggctacgtcacggcggcgcagaacaagcaggccggagccgagatcggg
cgcatcccggtggactcgatctactcgccggtgctcaaggtgacctaccgggtcgaggcg
acccgggtcgagcagcgcaccgacttcgaccgcctggtgatcgacgtcgagaccaaggcg
tcgatcggtccgcgtaccgcactggcctcggccgggtccacgctggtggagctgttcggc
ctggcgcgtgagctggacgagacggccgagggtatcgacatcggcccctcgccgcaggac
gcccagctggccgccgacctggcgctgccgatcgaggagctggacctgacggtccgctcg
tacaactgcctcaagcgcgagggcatcaacaccgttggtgaactcatcgggcgtaccgag
gccgaccttctcgacatccggaacttcggtcagaagtcgatcgacgaggtcaagatgaag
ctcgccgggatgggtctggggctgaaggactcggctccgaacttcgacccggcgcaggtc
gtggacaccttcggcgaggccgactacgacaccgacgactaccgcgagaccgagcagctc
tag
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