Plantactinospora sp. KBS50: CIK06_07910
Help
Entry
CIK06_07910 CDS
T05048
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
plk
Plantactinospora sp. KBS50
Pathway
plk00040
Pentose and glucuronate interconversions
plk01100
Metabolic pathways
plk02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
plk00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
CIK06_07910
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
CIK06_07910
Enzymes [BR:
plk01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
CIK06_07910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
CBM_2
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
ASW54134
LinkDB
All DBs
Position
complement(1738788..1740176)
Genome browser
AA seq
462 aa
AA seq
DB search
MLARRRRPTLLAITTVIATTAALLTAGVLAAGTASAAAGCQVAYSLGGQWPGGFTANLTI
TNLGDPISGWTLRWTYGAGQQVTSAWNATVTQSGSQVTATNVDYNAGVGTNGTVSFGFNG
TWNNSSNPTPTDFSLNGVTCNGSVPTTPGGGPTSASPSTSPTPTPTPTPTTGPTSAPQTG
LVGWATQNGGTTGGGSAATTTVTTASALTSAVGSTAASVIRVSGTISCSGMLRVRSNKTI
LGNPGATIVGCGFNINGDRNVIIRNLTFRDWDDDAINVQESATNIWIDHNTMSNGYDGAV
DIKRGSDFITVSWNRLFNHDKTMLLGHSDDNAAQDVGHLRVTYHHNWFDGTTQRHPRVRF
GNPVHVYNNYYYNNSGYGVASTMNAGVLVEGNYFDHVSDPYHLGEAASGPGTLVARNNYF
VSSGSGQTGGSVASIPYAYTVDTPSNVKSIVTGGAGAGRITV
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcacgacggcgtcgcccgacgctgctcgccatcaccaccgtcatcgccaccacc
gccgcgttgctcaccgccggcgtcctcgccgccggcaccgcgagcgcggcggccggctgc
caggtcgcctactcgctgggcggccagtggccgggtggattcaccgccaacctcaccatc
accaacctcggcgacccgatctccggttggaccctgcgctggacgtacggcgcgggccag
caggtgacctcggcctggaacgcgaccgtcacccagagcggcagccaggtcaccgccacc
aacgtcgactacaacgccggtgtcggcaccaacggcaccgtctcgttcgggttcaacggc
acctggaacaactccagcaacccgacgccgaccgacttcagcctgaacggtgtcacctgc
aacgggtccgtacccaccacaccgggcggcggccccaccagcgcctcaccgtcgaccagc
cccacccccaccccgacgccgacaccgaccaccgggccgacgtcggcaccgcagaccggc
ctggtcggctgggccacccagaacggtggcaccaccggcggcggcagcgccgcgaccacc
acggtcaccacggcctcggcgctgaccagcgcggtcggctccaccgccgcctcggtcatc
cgggtctccggcaccatctcctgctccggcatgctgcgggtccggtccaacaagaccatc
ctcggcaaccccggcgcgaccatcgtcggctgcggcttcaacatcaacggtgaccgcaac
gtcatcatccgcaacctgaccttccgggactgggacgacgacgcgatcaacgtgcaggag
tcggcgaccaacatctggatcgaccacaacacgatgagcaacgggtacgacggcgcggtg
gacatcaagcgcggctcggacttcatcacggtgtcctggaaccgtctcttcaaccacgac
aagacgatgctgctcggacacagcgacgacaacgccgcgcaggacgtgggacacctgcgg
gtgacctaccaccacaactggttcgacggcaccacccagcgccacccccgggtccgcttc
ggcaacccggtgcacgtctacaacaactactactacaacaacagcgggtacggcgtggcc
tccacgatgaacgccggcgtgctcgtcgagggcaactacttcgaccacgtcagcgacccg
taccacctgggtgaggcggcctccgggccgggcaccctggtcgcccggaacaactacttc
gtcagttccggcagcgggcagaccggcggcagcgtcgccagcatcccgtacgcgtacacg
gtggacaccccgagcaacgtgaagtcgatcgtgaccggcggcgcgggcgccggccggatc
acggtctga
DBGET
integrated database retrieval system
