Plantactinospora sp. KBS50: CIK06_10455
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Entry
CIK06_10455 CDS
T05048
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
plk
Plantactinospora sp. KBS50
Brite
KEGG Orthology (KO) [BR:
plk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plk03019
]
CIK06_10455
Enzymes [BR:
plk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CIK06_10455
Messenger RNA biogenesis [BR:
plk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CIK06_10455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
nSTAND_NTPase5
T2SSE
nSTAND3
NACHT
AAA_25
AAA_30
SLFN-g3_helicase
PhoH
Motif
Other DBs
NCBI-ProteinID:
ASW57587
LinkDB
All DBs
Position
complement(2368198..2372241)
Genome browser
AA seq
1347 aa
AA seq
DB search
MAARIAELGHADQRRISRRLDGTRRIRDPRRREHTMAQIAADVAAAESRLAARRESVPVV
RYPAELPVSERRAEIAAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVRGRIGHTQPR
RLAARTVADRIAAELDTELGEVVGYKVRFTDRVGDRTLVKLMTDGILLTELQHDRMLRQY
DTLIIDEAHERSLNIDFILGYLKQLLPARPDLKVIITSATIDPERFARHFAAPDPRGGEP
TPAPIVEVSGRTYPVQVRYRPLVEAAGDDEDTDTVRDQIQAIGDAVEELAAEGPGDVLVF
LSGEREIRDTADALGKLVARAPALRGTEILPLYARLSTAEQHRVFQSHSSRRVVLATNVA
ETSLTVPGIKYVVDPGTARISRYSNRLKVQRLPIEPISQASANQRKGRCGRTSDGICIRL
YDEQDFLSRPEFTDPEILRTNLASVILQMTAIGLGDIGAFPFVEPPERRNITDGVNLLHE
LNALDPAGTDTDRRLTPLGRRLAQLPVDPRLARMVLEGERVGCATEVVVIAAALSIQDPR
ERPADRQAQADQAHARFTDRESDFVTFLNLWRYLREQQRELSSSAFRRLCRAEYLNYLRV
REWQDIVSQVRQALRTADSGAGRRGRRPPARDADPGGAGAGGGAAGEAADGRRVPGADLP
AEIDTPRVHQALLAGLLSHLGLKDAAAKNEYLGARGAKFGIFPGSALFKKPPRWVMAAEL
VETSRLWGRVVGRIEPEWVEPLAQHLVKRSYSEPHWEKKQGAVMAYEKVTLYGVPLVASR
KVNFGRIDPPLCRELFIRHALVEGDWQTHHRFFAENRELLDEVSELENRARRRDILVDDE
TLFEFYDQRIPADVVSARHFDAWWKQTRRDRPDLLTFTRELLINAGRGGVAEDDYPDRWQ
AEGVSLPVTYAFDPGTDADGVTVDIPLPLLNQVPAEGFDWQVPGLREELVIALIRSLPKP
VRRNFVPVPDFARAALASIRPGTEPLLDALTRELRRMTGVTVPRDAWDPTRLPPHLRMNF
RVLDEDGRPVAQGRDLPTLQRELRPRVRQVVAAAAPEVARTGLTGWSIGTLPRTVEQVRA
GYPVTAYPGLVDEGGTVGVRVFDTEAERNAAHWAGTRRLLALTVPSPAKFLQGRLSNEAK
LALSRNPHGGVQPLIADATGAAIDRLMADAGGPAWDAEGFAALRERVRADLVDTVVETMD
RVRRVLAAAYAVEQRLGATRNLAVVAALADIRNQLTGLVHAGFITEAGYERLPDLLRYLT
AIERRLDRLPGNPQRDKAQQDRIAVVAKEYADLVATLAPARRSDPQVQRIRWMIEELRVN
VFAQALGTPYPVSEQRIYRAMDEAEGR
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcccggatcgccgagttgggccacgccgaccagcgccggatctcccgccggctc
gacggcacccgccggatccgggacccgcgccgccgggaacacaccatggcgcagatcgcc
gccgacgtggcggcggccgagtcccggctggccgcccgccgggagtcggtgcccgtggtc
aggtacccggccgagctgccggtgagcgagcgccgggcggagatcgccgcggcgatccgc
gaccaccaggtcgtgatcgtggccggtgagacgggatccgggaagaccacccagctgccg
aagatctgcctggagctgggacgcggggtgcgcggccggatcgggcacacccagccgcgc
cggctggccgcccgcaccgtcgccgaccggatcgccgccgaactcgacaccgaactgggc
gaggtggtcgggtacaaggtccggttcaccgaccgggtgggcgaccggacgctggtcaag
ctgatgaccgacggcatcctgctgaccgagttgcagcacgaccggatgctccggcagtac
gacacgctgatcatcgacgaggcgcacgagcgcagcctgaacatcgacttcattctcggc
tacctgaaacagctgctgcccgcccgccccgacctcaaggtgatcatcacctcggccacc
atcgacccggaacggttcgcccggcacttcgccgccccggacccgcgcggcggcgagccc
accccggcgccgatcgtggaggtctccggccggacgtacccggtgcaggtgcggtaccgg
ccgttggtggaggcggccggggacgacgaggacaccgacacggtccgggaccagatccag
gccatcggcgacgcggtcgaggaactggcggcggagggtcccggcgacgtcctggtcttc
ctcagcggggagcgggagatccgggacaccgcggacgcgctcggcaagctggtggcgcgg
gcgccggcgctgcgcggcaccgagatcctgccgctgtacgcccggctgtccaccgccgag
cagcaccgggtcttccagtcgcactccagccgccgggtggtgctggccaccaacgtggcc
gagacctcgctgacggtgcccggcatcaagtacgtcgtcgaccccggcaccgcgcggatt
tcccgctacagcaaccggctcaaggtgcagcggctgcccatcgagccgatctcgcaggcg
tcggcgaaccagcggaagggccggtgcgggcgtacctcggacggcatctgcatccggctc
tacgacgagcaggacttcctgtcccggcccgagttcaccgacccggagatcctgcgcacc
aacctggcgtcggtgatcctgcagatgaccgcgatcggcctcggcgacatcggcgccttc
ccgttcgtcgagccgcccgagcggcgcaacatcaccgacggggtcaacctgctgcacgag
ctgaacgcgctcgacccggcgggcaccgacaccgaccgccggctgaccccgctgggccgc
cggctggcgcagcttccggtggacccccggctggccaggatggtgctggagggtgagcgg
gtgggctgcgccaccgaggtggtggtgatcgccgcggcgctgtccatccaggacccgcgg
gaacggccggcggaccggcaggcgcaggccgaccaggcgcacgcccggttcaccgaccgg
gagtcggacttcgtcaccttcctcaacctctggcggtatctgcgcgagcagcagcgggaa
ctctcctccagcgcgttccgccggctgtgccgggccgagtacctcaactacctgcgggta
cgcgagtggcaggacatcgtcagccaggtgcgccaggccctgcgtaccgccgattcgggt
gccgggcggcgcggccggcgcccaccggcgcgcgacgccgaccccggcggcgccggtgct
ggtggtggcgccgccggagaggcggccgacggccggcgggttcccggcgccgacctgccc
gcggagatcgacacgccgcgggtgcaccaggcgctgctggccgggctgctgtcccacctc
gggctcaaggacgccgcggccaagaacgagtacctgggcgcgcggggcgcgaagttcggc
atcttccccggctcggcgctgttcaagaagccgccgcgctgggtgatggcggccgagttg
gtggagacctcccggctgtggggccgggtggtcgggcggatcgagcccgagtgggtcgag
ccgctcgcgcagcacctggtgaagcgcagctacagcgagccgcactgggagaagaagcag
ggcgccgtgatggcgtacgagaaggtcaccctgtacggcgtaccgctggtggcctcccgg
aaggtgaacttcggccggatcgacccgccgctgtgccgggagctgttcatccggcacgcc
ctggtggagggcgactggcagacccaccaccgcttcttcgccgagaaccgggagctgctg
gacgaggtgtccgagttggagaaccgggcccgtcgccgggacatcctggtcgacgacgag
accctgttcgagttctacgaccagcggatcccggccgacgtggtctcggcccggcacttc
gacgcctggtggaagcagacccgccgggaccggcccgacctgctgaccttcacccgcgag
ctgctgatcaacgccggccggggcggggtggccgaggacgactacccggaccggtggcag
gccgagggcgtcagcctccccgtgacctacgccttcgatccgggcaccgacgccgacggg
gtgaccgtggacatcccgctgccgctgctcaaccaggtgccggcggaggggttcgactgg
caggtgccgggcctgcgcgaggagttggtgatcgcgctgatccgctcgctgcccaagccg
gtgcgccgcaacttcgtaccggtgcccgacttcgcccgcgcggcgctggcgagcatccgg
ccgggaaccgaaccgctgctggacgcgctgacccgcgagctgcgccggatgaccggggtg
accgtgccgcgggacgcctgggacccgacccggctgccgccgcacctgcggatgaacttc
cgggtactggacgaggacggcaggccggtcgcgcagggccgcgacctgccgaccctgcaa
cgcgagctgcgaccccgggtacgtcaggtggtcgccgccgccgcgcccgaggtggcccgg
accgggctcaccgggtggagcatcggcaccctgccgcgcaccgtggagcaggtccgcgcc
ggctacccggtgaccgcgtacccggggttggtcgacgagggcggcacggtcggggtccgg
gtgttcgacaccgaggccgagcggaacgccgcgcactgggccggcacccggcggctgctg
gcgctgaccgtgccgtcgccggcgaagttcctccagggccggctcagcaacgaggccaag
ctggcgctcagccgcaacccgcacggcggggtgcagccgctgatcgccgacgccacgggc
gcggcgatcgacaggctgatggccgacgccggcggcccggcctgggacgcggagggcttc
gccgcgctgcgcgagcgggtccgcgccgacctggtggacaccgtcgtggagaccatggac
cgggtacgtcgggtgctcgccgccgcgtacgcggtcgagcagcgcctcggtgccacccgg
aacctggccgtggtggccgcgctggccgacatccgcaaccagctcaccggcctggtgcac
gccgggttcatcaccgaggccgggtacgagcggctgcccgacctgctgcgctacctgacc
gccatcgagcggcgactggaccggctgcccggcaacccgcagcgggacaaggcccagcag
gaccggatcgccgtggtcgccaaggagtacgcggatctggtggcgacgcttgccccggcc
cgccggtcggatccgcaggtgcagcggatccggtggatgatcgaggagctgcgggtgaac
gtgttcgcccaggcgctcggcaccccgtacccggtgtccgagcagcggatctaccgcgcc
atggacgaggccgagggccgctga
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