Plantactinospora sp. KBS50: CIK06_10890
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Entry
CIK06_10890 CDS
T05048
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
plk
Plantactinospora sp. KBS50
Pathway
plk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIK06_10890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plk03019
]
CIK06_10890
03400 DNA repair and recombination proteins [BR:
plk03400
]
CIK06_10890
Enzymes [BR:
plk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CIK06_10890
Messenger RNA biogenesis [BR:
plk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CIK06_10890
DNA repair and recombination proteins [BR:
plk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CIK06_10890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
HEM4
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
ASW54582
UniProt:
A0A248YLZ7
LinkDB
All DBs
Position
complement(2457867..2459504)
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AA seq
545 aa
AA seq
DB search
MKLPLNSSRLRRAAKSLFGWRTLRPNQLAAMRSVMKRRDTLVVLPTGAGKSAIYQIPASL
IPGPTVVISPLLALQQDQIASLNERERPELRAVRVSSHESAAQQAAALEAIRDGSAEFLF
ITPEQLTNQERMAEVRALRPALVAVDEAHCISAWGHDFRPDYLALGHLIRGLGRPPVVAL
TATASPPVREDIIARLGLRDPKVVSSGLDRPNIFVEVAHCPTENYRWRRLIALLREDTRP
GIIYVPTRRAAEDLAERLTRAGFPAEFYHGGMAAGARNELHEAFLADRVPIMVATSAFGM
GIDKPNIAWVVHMALPDSPDSYLQEIGRAGRDGEPARALLLWQAEDIGLHRFFSGGTPDE
TELRDLAALLREKPGSRSTLRDRSGLGPRKLGNLLSLLEQVGAAAPAANHMITAPRYAPE
PADAARAAVAEAERQQSVQRSRTDMMRAYAETRACRGQTLLAYFGEQMAHVCGHCDNCAA
GTSVPDDGASGPFPVHSQVRHTEWGAGLVLSYEADKMTVLFDEVGYKTLSVPVVSQQGLL
TADDR
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgccactgaattcgagccgcctgcggcgggccgcgaagagcctcttcggctgg
cggacgctgcgtcccaaccaactcgcggccatgcggtcggtgatgaagcgccgggacacc
ctggtggtgctgcccaccggcgcgggcaagtcggcgatctaccagattccggccagcctg
atccccggccccacggtggtgatctcaccgctgctggcgttgcagcaggaccagatcgcc
tcgctgaacgagcgggagcgccccgaactgcgcgccgtccgggtcagctcgcacgagtcg
gcggcgcagcaggccgcggcgcttgaggcgatccgggacggttccgccgagttcctgttc
atcacccccgagcagttgaccaaccaggagcggatggccgaggtacgcgcgctgcgcccg
gccctggtcgcggtcgacgaggcgcactgcatctcggcgtggggccacgacttccggccg
gactacctggccctgggccacctgatccgcggcctcggccggccgccggtggtggcgctg
accgccaccgcctccccgccggtgcgggaggacatcatcgcgcggctcggcctgcgcgac
ccgaaggtcgtctcctccgggctggaccgtccgaacatcttcgtcgaggtggcgcactgc
cccaccgagaactaccggtggcggcggctgatcgcgctgctgcgcgaggacacccggccg
ggcatcatctacgtgccgacccggcgggccgccgaggatctggccgagcggctcacccgg
gccggtttcccggccgagttctaccacggcggcatggccgcgggcgcccggaacgaactg
cacgaggcgttcctcgccgaccgcgtaccgatcatggtggcgacctcggcgttcgggatg
ggcatcgacaagccgaacatcgcctgggtggtgcacatggcgctgcccgactccccggac
agctacctgcaggagatcgggcgcgccgggcgggacggcgagccggcccgggcgctgctg
ctgtggcaggccgaggacatcgggctgcaccggttcttctccggcgggaccccggacgag
accgagctgcgggacctggccgccctgctgcgcgagaagccgggctcccgcagcacgctg
cgcgaccgctccgggctcggcccgcgcaagctgggcaacctgctcagcctgctggaacag
gtgggtgcggcggcgccggccgcgaaccacatgatcaccgcgccccggtacgccccggag
ccggccgacgcggcccgcgccgcggtcgccgaggccgagcgccagcagtcggtgcagcgg
tcccggaccgacatgatgcgggcgtacgcggagacccgcgcctgccgcgggcagaccctg
ctggcctacttcggcgaacagatggcgcacgtctgcgggcactgcgacaactgcgccgcc
ggcaccagcgtccccgacgacggcgccagcgggccgttcccggtgcacagccaggtgcgg
cacaccgagtggggtgccgggctggtgctcagctacgaggcggacaagatgacggtgctg
ttcgacgaggtcggctacaagaccctgtcggtgccggtggtgagccagcagggcctgctc
accgcggacgaccggtga
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