Plantactinospora sp. KBS50: CIK06_15075
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Entry
CIK06_15075 CDS
T05048
Name
(GenBank) heavy metal transporter
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
plk
Plantactinospora sp. KBS50
Pathway
plk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CIK06_15075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plk03019
]
CIK06_15075
03009 Ribosome biogenesis [BR:
plk03009
]
CIK06_15075
Enzymes [BR:
plk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CIK06_15075
Messenger RNA biogenesis [BR:
plk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CIK06_15075
Ribosome biogenesis [BR:
plk03009
]
Prokaryotic type
rRNA helicases
CIK06_15075
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
WSD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASW55214
LinkDB
All DBs
Position
3368297..3370012
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AA seq
571 aa
AA seq
DB search
MAGDRGEEIEMTDEAEDGGITFADLGLRPELLGALSGLGYEEPTPIQRGAIPSLLAGRDL
LGQAATGTGKTAAFALPILHRLPAGERGADPMALVLVPTRELAVQVSQAVHRYGRELDAR
VLPIYGGQPIGRQLRSLQAGVDVVVATPGRALDHLGRGTLRLQDVQVVVLDEADEMLDMG
FAEDIEAILQELPENRQTVLFSATMPARIEGMASSHLRDAVRVEIAREPARPGGAPLVRQ
SAYLVARPHKPAALGRVLDIEAPDAAIVFCRTREEVDQLAESLNGRGYRAEALHGGMSQE
QRDRVMGRLRGGTADLVVATDVAARGLDIEQLTHVVNYNVPADPESYVHRIGRVGRAGRE
GVAITLAEPREHRMLKTIERVTKGRISVEKVPTTADLRARRLDLTRAALAESLLEDDLDS
FRVVVEPLADEFDIMEVALAAVKLAHEAGGAAIDEEEIPEVAPGPTREARGRGPGGGGRG
ERRGRTPSRGMARLFIGAGRHAGVRPQDLVGAIAGESRLSGREVGSIEIADRFSLVEVPE
SAVQEVIGALRATTIKGRKVTVRRERVAPPR
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggctggcgaccggggcgaggagatcgagatgacggacgaggccgaggacggcggcatc
accttcgcggacctcgggttgcgacccgagctgctgggggcgctgtccgggttggggtac
gaggaaccgacgccgatccagcgcggcgcgattccgagcctgctggcgggccgggacctg
ctgggccaggccgcgaccgggaccgggaagacggccgcgttcgcgctgccgatcctgcac
cggttgccggccggggagcgcggcgcggacccgatggccctggtcctggtgcccacccgc
gagctggcggtgcaggtgtcgcaggcggtgcaccggtacggccgggagctggacgcgcgg
gtgctgccgatctacggcgggcagccgatcggccgccagctgcgctcgttgcaggccggc
gtcgatgtggtggtcgccactccgggccgcgcgctcgaccacctcggccggggcacgctg
cggctgcaggacgtgcaggtggtggtgctggacgaggccgacgagatgctggacatggga
ttcgccgaggacatcgaggcgatccttcaggaacttcctgaaaaccggcagaccgtgctg
ttctcggccacgatgccggcccggatcgagggcatggccagcagccacctgcgggacgcc
gtccgggtggagatcgcccgcgagccggcccggcccggcggcgcgccgctggttcggcag
agcgcctacctggtggcccggccgcacaagccggccgcgctcggccgggtgctggacatc
gaggcgccggacgcggcgatcgtcttctgccggacgcgggaggaggtcgaccagctcgcc
gagtcgctcaacggccgcggctaccgcgcggaggcgttgcacggcgggatgagccaggag
cagcgggaccgggtgatggggcggttgcgcggcggcacggcggatctcgtggtggccacc
gacgtggccgcgcgcgggctggacatcgagcagctgacgcacgtggtgaactacaacgtg
ccggccgatccggagtcgtacgtgcaccgcatcggccgggtcggtcgggccggccgggag
ggcgtggcgatcaccctcgccgagccgcgggagcaccggatgctcaagacgatcgagcgg
gtcaccaagggccggatctcggtggagaaggtgcccaccaccgccgacctgcgggcgcgc
cggttggacctgacccgggcggcgctggccgagagcctcctggaggacgacctggattcc
ttccgggtggtggtggagccgctcgcggacgagttcgacatcatggaggtggcgctggcc
gcggtgaagctggcgcacgaggccggtggggcggccatcgacgaggaggagatcccggag
gtggcgcccggcccgacgcgcgaggcgcggggccgcggtccgggcggcggcggtcgcggc
gagcggcggggccgcacgccgtcccgcgggatggcccggctgttcatcggcgcgggccgg
cacgcgggggtccggccgcaggacctggtgggcgcgatcgccggcgagtcgcggctgtcc
ggtcgcgaggtcgggtcgatcgagatcgcggaccggttctcgctggtggaggtgcccgag
tccgcggtgcaggaggtgatcggcgcgttgcgcgccaccaccatcaagggccggaaggtc
acggtacgccgggagcgggtggcgccgccgcgctga
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