Plantactinospora sp. KBS50: CIK06_17310
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Entry
CIK06_17310 CDS
T05048
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
plk
Plantactinospora sp. KBS50
Brite
KEGG Orthology (KO) [BR:
plk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plk03016
]
CIK06_17310
Enzymes [BR:
plk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CIK06_17310
Transfer RNA biogenesis [BR:
plk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CIK06_17310
Prokaryotic type
tRNA splicing ligases
CIK06_17310
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ASW55558
LinkDB
All DBs
Position
3979910..3981109
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AA seq
399 aa
AA seq
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MSHTLLPGTRAPVKVWADPAGIEPEATRQLRNIGTLPWVEGVAVMPDVHYGKGATVGSVI
AMRQALAPAAVGVDIGCGMSAVRTNLTGADLPDDLGPLRSAIEAAIPVGFGAHDEPVNPY
RIHGLSTAGWDAFWSGFAGLDRGVRALETRAHRQLGSLGGGNHFIEVCLEEGGPDAGRVW
LMLHSGSRNIGKELAERHIGVARTLPHNADLPDRDLAVFVAGTPEMAAYRRDLAWAQEYA
ARNRAIMLALLCGVLRSAVPVVRFDEPISCHHNYVAQERYGGVELLVTRKGAIRAGRGEL
GIIPGSMGTGSYVVRGLGNDEAYRSASHGAGRRMSRSKARRTFTVHDLAAQTSGVECRKD
AGVVDEIPGAYKDLDEVMARQSDLVEVVARLRQVVCVKG
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacaccctgctgcccggcacccgggcaccggtcaaggtctgggccgacccggcc
ggcatcgagccggaggccacccggcagctgcgcaacatcggcaccctgccctgggtggaa
ggggtcgcggtgatgccggacgtgcactacggcaagggcgccaccgtcggctcggtgatc
gccatgcggcaggcgctggccccggccgcggtcggggtggacatcggctgcggcatgtcc
gcggtccggaccaacctgaccggcgccgacctgccggacgacctcggcccgctgcgctcg
gcgatcgaggcggccatcccggtcggcttcggcgcgcacgacgagccggtcaacccgtac
cggatccatggcctgtcgacggccgggtgggacgcgttctggtccggtttcgcgggcctc
gaccggggcgtacgggcgctggagacccgggcgcaccggcagctcggcagcctcggcggc
ggcaaccacttcatcgaggtctgcctcgaagagggtgggccggacgccgggcgggtctgg
ctgatgctgcactccgggtcccgcaacatcggcaaggagctggcggagcggcacatcggg
gtggcgcggacgctgccgcacaacgcggacctgccggaccgcgacctggcggtcttcgtc
gccggtacgccggagatggcggcctaccgccgagacctggcctgggcgcaggagtacgcc
gcccgcaaccgggcgatcatgctggcgctgctgtgcggggtgctccgctcggcggtgccg
gtcgtccggttcgacgagccgatctcctgccaccacaactacgtggcgcaggagcggtac
ggcggggtggagctgctggtgacccgcaagggtgcgatccgggccggccggggtgagctg
ggcatcatcccgggttccatgggcaccgggtcgtacgtcgtccgcgggctgggcaacgac
gaggcgtaccggtcggcgtcgcacggcgcgggacggcggatgtcccggtcgaaggcccgc
cggacgttcaccgtgcacgacctggccgcccagacctccggtgtggagtgccgcaaggac
gccggggtggtcgacgagatccccggcgcgtacaaggatctcgacgaggtgatggcccgg
cagtcggacctggtcgaggtggtggcgcggctgcgccaggtggtgtgcgtgaagggctga
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