Plantactinospora sp. KBS50: CIK06_24465
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Entry
CIK06_24465 CDS
T05048
Name
(GenBank) DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
plk
Plantactinospora sp. KBS50
Pathway
plk03420
Nucleotide excision repair
plk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CIK06_24465
03430 Mismatch repair
CIK06_24465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plk03400
]
CIK06_24465
Enzymes [BR:
plk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CIK06_24465
DNA repair and recombination proteins [BR:
plk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CIK06_24465
MMR (mismatch excision repair)
Other MMR factors
CIK06_24465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ASW56639
UniProt:
A0A248YSX5
LinkDB
All DBs
Position
complement(5668718..5672281)
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AA seq
1187 aa
AA seq
DB search
MTQPSLFAAAPAPPAADAGPRYTPVELARLLRLPAPTREQAAIVAAPVEPLLVVAGAGSG
KTETMAARVVWLVANGYARPEQILGLTFTRKAAGELAHRVRTRLGQLVRRLGRDPRDRDG
DLIGGEPTVATYHSYAARVVTEHGLRSGYEPATRLLTEAARWQVVDWLVRTYDGDMTGVD
RTPATITDAVLALAAELAEHLVEPGDLAAWTGRFFAEVQSRPGRVYADVRRALGVQQTRL
KLLPLVRAFQQRKLDFEAMDFGDQLLRAARVAREHPEVGATERERYRVVLLDEYQDTSHA
QVVLLRSLFGGGHPVTAVGDPCQSIYGWRGASAGTLDRFPTEFPRPDGGAAHALTLSTSW
RNRPEILRVANALSAPLRSAGAEVAELSAAYSTAEPIPGRTARGAPADTVCCALLPTYAD
EAEWIADGILAAWRGAARSTALPEQIPLDRRPSTAVLVRLRSQIPAIEAALRARGLPVEV
MGLGGLLDTPEVQDVVCTLRVLADPTDGAALLRLLTGARWRIGPRDLVELHRRARAIATA
RRELPRLAAAEAQPEPGLGAGGHRPLFPVVEEAGAVDPEIVTDSLDEATLVEALADLGPA
QRYSAEGYARLKAYGRELALLRHRLDQSLPDLIADIERTTGLDVEVAVRAGLGGSGGDAG
LARGHLDALGDVAARFTRDSAGAPLSAFLAFLAAAQDEERGLAPGEVEVVEGAVQVLTAH
AAKGLEWDVVAVAGLSRAVWPGPVRGSDHYLYGLGVLPFPLRGDAAGLPELSLAEATDQK
GVAAALTRFSERWWAHDEREERRLGYVAVTRPRRLLLCSGYWWGEGTKRPRGPSAFLTEI
RDQCLAGAGTVDEWAPEPAPDEPNPTSRIVPRADWPADPLGARRPDVADGAALVRRALTA
VEGAPAAPVDGADRPAAVDGADRPPAVDGADRPPAVGGADGADRPVPVGGADRPAPADAG
RWRQEVDLLLAERDRLARQTGAVQVPLPDHLTVSQLVTLHRDPQQLARTLRRPLPARPDP
YARRGTAFHTWLEQRFGAGRLLDIDELPGSADEEAAGDEELLALQERFLASEWAERVPVE
VEVPFATVVAGVVVRGRMDAVYAAPGGRFEVVDWKTGRRPAGPAARAAAVQLAAYRLAWA
ELAGVPVDRVRAAFHYVREGATVRPADLLDAEGLAALVAGVPMAEPR
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
gtgacccagccctcgctcttcgccgccgcgccggcgccgccggccgccgacgccggtccc
cggtacaccccggtcgagctggcccggctgctccggctgccggcgcccacccgggaacag
gcggccatcgtcgcggcgccggtcgagccgctgctggtggtcgccggcgccgggtcgggc
aagaccgagacgatggccgcccgggtggtctggctggtggccaacgggtacgcgcggccg
gagcagatcctcggcctgaccttcacccgcaaggcggccggcgagctggcgcaccgggta
cggacccggctcggccagctggtccggcggctgggtcgggacccgcgggaccgggacggc
gacctgatcggcggcgagccgaccgtggccacctaccactcgtacgccgcccgggtggtc
accgagcacggcctgcgttccgggtacgagccggccacccggctgctcaccgaggcggcg
cgctggcaggtcgtggactggctggtgcgcacctacgacggtgacatgaccggggtggac
cggaccccggccaccatcaccgacgcggtgctggcgctcgccgcggagctggccgagcac
ctggtcgagccgggcgacctggcggcctggaccggccggttcttcgccgaggtgcagtcc
cggcccggccgggtgtacgcggacgtgcgccgggcgctcggcgtccagcagacccggctc
aagctgcttcccctggtgcgggcgttccagcagcgcaagctggacttcgaggcgatggac
ttcggcgaccagctcttgcgggccgcgcgggtggcccgggagcatccggaggtcggcgcg
accgagcgggagcggtaccgggtggtgctgctggacgagtaccaggacaccagccacgcc
caggtggtgctgctgcgctcgctgttcggcggcgggcatccggtgaccgcggtgggcgac
ccgtgccagtccatctacggctggcgcggcgccagcgcgggcacgctcgaccgcttcccc
accgagtttccccggccggacgggggagcggcccacgcgctgaccctgagcaccagctgg
cggaaccggcccgagatcctccgggtggccaacgccctgtcggcgccgctgcgcagcgcc
ggtgccgaggtcgcggagctgtccgccgcgtacagcaccgccgagccgatccccggccgc
acggcccgcggggcgccggccgacaccgtgtgctgcgcgctgctgcccacgtacgcggac
gaggcggagtggatcgccgacggcatcctcgcggcctggcgcggcgcggcgcgcagcacc
gcgctgccggagcagatcccgctggaccggcggcccagcaccgccgtgctggtgcgactg
cgcagccagatcccggcgatcgaggcggcgctgcgggcgcgcggcctgcccgtcgaggtg
atggggctgggcggcctgttggacacccccgaggtccaggacgtggtctgcaccctgcgg
gtgctggccgacccgaccgacggggccgcgctgctgcggctgctcaccggcgcgcggtgg
cggatcggcccccgggacctggtggagctgcaccgccgggcgcgggcgatcgccacggcc
cggcgtgagctgccccggctcgccgccgccgaagcgcagccggagccggggctcggcgca
ggcgggcaccggccgctgtttccggttgtcgaggaggccggcgccgtcgatccggagatc
gtcaccgacagcctggacgaggccaccctggtggaggcgctggccgatctcggcccggcc
cagcggtactcggccgagggatacgcccggctcaaggcgtacggccgggagttggcgctg
ctgcggcaccggttggaccagtccctgcccgacctgatcgccgacatcgaacgcaccacg
ggcctggacgtggaggtggcggtgcgggccgggctgggcggctccggcggggacgccgga
ctggcccgcgggcacctggacgcgctgggcgacgtggccgcgcggttcacccgggactcg
gccggggcgccactgtcggcgttcctggccttcctggccgcggcgcaggacgaggaacgc
gggctggcgcccggcgaggtggaggtggtggagggcgccgtccaggtgctcaccgcgcac
gccgcgaagggtctggagtgggacgtggtcgcggtcgccgggctcagccgggcggtctgg
cccggcccggtacgcgggtcggaccactacctgtacggcctgggtgtgctgccgttcccg
ttgcgtggcgacgcggccggcctgcccgaactgtcgctggccgaggcgaccgaccagaag
ggggtggccgcggcgctgacccgcttcagcgagcggtggtgggcgcacgacgaacgggag
gaacggcggctcgggtatgtcgccgtcacccggccgcgccggctgctgctgtgttccggg
tactggtggggcgagggcaccaagcggccgcgcgggccgtcggcgttcctcaccgagatc
cgcgaccagtgcctcgccggggcgggcacggtggacgagtgggcgcccgagccggcgccg
gacgagccgaacccgaccagccggatcgttccccgcgcggactggccggcggatccgctg
ggcgcccgccggccggacgtggccgacggcgccgcgctggtccggcgagccctgaccgcc
gtggagggtgcaccggccgcgccggtcgacggtgcggaccgcccggccgcggtcgacggt
gcggatcggccgcccgcggtcgacggtgcggatcgcccgcccgcggtcgggggtgcggat
ggtgcggatcgaccggtcccggtcgggggtgcggatcggccggccccggcggacgccggg
cgctggcggcaggaggtggacctgctgctggccgagcgggaccggctggcccggcagacc
ggggcggtccaggtgccgctgcccgaccacctcaccgtgtcgcagctggtgaccctgcac
cgggatccgcagcaactcgcccgcacgctgcgccggccgctgccggcgcgacccgatccg
tacgcccgccggggcaccgccttccacacctggctcgaacagcgcttcggcgccggccgg
ctgctggacatcgacgagttgcccggttcggcggacgaggaggcggccggcgacgaggag
ctgctggcattgcaggaacggttcctggccagcgagtgggccgagcgggtaccggtcgag
gtggaggtcccgttcgcgacggtggtcgccggggtggtggtgcgcggacggatggacgcg
gtgtacgccgcgcccggcgggcggttcgaggtggtcgactggaagaccggccgccggccc
gccggcccggccgcgcgggccgccgcggtgcaactggccgcgtaccggctggcctgggcg
gaactggccggggtgccggtggatcgggtgcgggcggcgttccactacgtccgggagggg
gcgacggtccgaccggccgatctgctcgacgcggagggactcgccgcgctcgtcgccggc
gtgccgatggcggaaccccgctga
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