Planctopirus limnophila: Plim_0106
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Entry
Plim_0106 CDS
T01225
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing)
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
plm
Planctopirus limnophila
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plm03032
]
Plim_0106
03400 DNA repair and recombination proteins [BR:
plm03400
]
Plim_0106
Enzymes [BR:
plm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Plim_0106
DNA replication proteins [BR:
plm03032
]
Prokaryotic type
DNA Topoisomerases
Plim_0106
DNA repair and recombination proteins [BR:
plm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Plim_0106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
SNaCT5
Motif
Other DBs
NCBI-ProteinID:
ADG65959
UniProt:
D5SN32
LinkDB
All DBs
Position
complement(147516..149861)
Genome browser
AA seq
781 aa
AA seq
DB search
MTENQEDRIQFREISSETRRRYLNYAMSVIQSRALPDVRDGLKPVQRRILYVMYEELRLM
ADAKTRKCAKISGDTTGNYHPHGNQSVYDTLVRLAQDFTLRYPLVDGQGNFGSIMGLPAA
AERYTEARLTGIAEQLMNELRFDTVEMRPNYDGTRKEPVVLPTRFPNLLVNGTAGIAVGM
ATNMPPHNLKEVLEACIHLITNPEASTKELLKFIKGPDFPLGGRMITDRKAMLPIYEEGR
GAFKVRAEWRMDKEKRAEVEDRVVIYSVPYGVETGPLLAEIGNVIASRKLPQLINAADET
DDKHGLRVVLELKKGSDPESVMAFLYKKTPLEQNFNYNSTVLIPDDQGLLTPARLPLHRL
LGEFLKFRLKVVKKRFQFQLDQLQARIHILRGLEIIFNGIDKAIKIIRNSNGKRDACDKL
MAAFPLDEPQTMAILEMQLYRISQLEIDTVLAELNTKQKEADRITRILAKDDRIWNVIEG
ELRELSEQFGDKRRTTLGSSDEVTEFDESHYIVRENTNVVLSKDGWIKRVGRLQSVESTR
VREGDQVLDVLPGSTVDHVIFFASDGIAYTMPISQVPVSSGYGEPLTKHYKFKDGVQVIA
AVTTDPRFTAVAEETAEGAEPAPPHLFVTTAQGQVMRVPLQPFRTASTRSGRKFCKLQEG
DVVAKVELIVDQTSVFLVTREARLIHFSLEEIPVLSGAGKGVRGIRLEEKEKDLVLGAAL
MSRPSDVLRLKLANEKELTCGQMKYALTTRGGKGVKVSHRSQVGEIVRPEIALVDWNSIE
G
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
gtgacagaaaatcaggaagaccgtattcagtttcgggaaatctcctctgagacccggcgg
agataccttaactacgcgatgtctgtcattcagtcgcgtgctttgcccgatgttcgagat
ggtctcaaacccgtccagcgccgcatcctctacgtcatgtacgaagaattgcggctgatg
gccgatgcgaagacgcgcaagtgcgcgaagatctccggcgataccaccggcaattatcac
cctcacggcaatcaatcggtctacgacacactcgttcgcctcgctcaagatttcactttg
agatacccgctcgtcgacgggcagggaaattttggctccatcatgggcctgcccgctgcc
gccgagcgatacaccgaagccaggctgacgggcattgccgaacaactcatgaacgagttg
cggttcgacactgtcgaaatgcggcccaattatgacggcacccgcaaagaaccggtcgtc
ttgcccaccaggtttccgaatctgctggtcaatgggactgccggcattgccgtggggatg
gcgacgaatatgccgccccataacttaaaagaagtgctcgaagcctgtattcacctcatt
acaaatcctgaggcgtctaccaaggaactgctcaagttcatcaagggccccgattttccg
ttgggtgggagaatgattaccgatcggaaagcgatgctccccatttatgaggaagggcgt
ggggctttcaaggtgcgggccgaatggcggatggataaagagaagcgggcggaagtggaa
gaccgggtggtgatctattcagtaccttatggcgtcgaaacagggccgctgctggcagag
attggcaatgtgatcgcaagccgcaagctgcctcaactgattaacgcggctgatgaaacc
gacgataaacacggcttgcgtgtggttctggaactgaagaaagggagtgacccggaatcg
gtgatggcgttcctctataaaaagacgccactggagcagaacttcaactacaacagcacg
gtcttgattccggatgatcaggggctgttaactccagcacgattgccgctccatcgtttg
ctgggtgagtttctcaagttccgtttgaaggtcgtcaagaaacgcttccagtttcaactt
gatcaactgcaggcgcggattcatatcctgcgcggcctggagatcatctttaacgggatc
gacaaggccatcaagatcattcgcaacagcaacggcaagcgagatgcctgcgacaagttg
atggcggcctttccgctcgatgaaccgcagaccatggcgattctcgaaatgcagttgtac
cgcatttcccagctggaaattgataccgtcctcgcggaactgaataccaaacagaaagag
gccgaccggatcacacgcattcttgccaaagacgatcgcatctggaatgtcatcgaaggc
gaactgcgcgagctgagtgagcagtttggcgataagcggcgaacgactttgggctcttcc
gacgaagtcactgagtttgatgaatcgcactatatcgttcgtgagaatacgaatgtggtg
ctcagcaaagatgggtggatcaaacgtgtcggccggctgcaaagtgtggaatcgacgcgc
gtccgcgaaggcgaccaggtgctcgatgtcctcccagggagcacggtcgatcatgtgatc
ttctttgccagcgacggaattgcctacacgatgcccatttctcaggtgccggtttcttct
gggtacggcgaaccactcaccaagcattacaagttcaaagatggtgtgcaggtgattgcc
gccgtcacgacagaccctcgctttaccgcggttgccgaagagacagccgaaggagccgaa
cccgcaccgccacatctctttgtcaccacagcccaggggcaggtgatgcgtgtgccgctt
cagccatttcgcacagcgagcacgagatcgggccgcaagttctgtaagctgcaggaaggt
gacgtggtggccaaggtcgaattgatcgttgatcagacatcggtctttctcgtcactcgc
gaagcgcggctcattcacttctcactcgaagagattcctgtcctttctggagcagggaaa
ggtgtgcgcggcattcgcctggaagagaaagagaaggatctcgtcctgggtgcggcactg
atgtcgcgacccagcgatgtgttgaggctcaagctggctaacgaaaaggaactgacctgc
gggcagatgaaatatgcattgacgacacgtggaggcaaaggggtcaaggtcagccatcgc
agtcaggtgggcgaaattgtgcgacccgagattgcactggtggattggaacagcattgaa
ggttga
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