Planctopirus limnophila: Plim_0119
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Entry
Plim_0119 CDS
T01225
Name
(GenBank) PAS sensor protein
Organism
plm
Planctopirus limnophila
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
PAS_4
PAS_9
PAS
PAS_8
HATPase_c
Response_reg
HisKA
PAS_7
PAS_11
Diguanyl_cycl_sensor
HPTransfase
Motif
Other DBs
NCBI-ProteinID:
ADG65972
UniProt:
D5SN45
LinkDB
All DBs
Position
complement(162257..166942)
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AA seq
1561 aa
AA seq
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MTANLDREDVRNSAPSLPLLDLLAAVSEASLDALFVKDSSGRYLFCNAAGTKLTNRTREQ
ILDQDDTAVFGSDTARIMRAQDQRVMQSGLPAAETHVVQIGDNLRSIQMTTKPYQDQHGT
VQGVIVIARDFADAAMGNRSHTVGVAAANHLERSGAEQALRESERQLADAQRIARIGSWV
WEPSSGKVWWSRGVFALFGVDPQVVQPSFQAFLQLLHPDDLPTAVARVDAMLAGADRFED
DLRIIRPDGQMIWLHSRAVATRDADGNILRVEGTDQDITARKLAAAEVQASQKFVKAVAE
TSPLTIYVFDLQQQSITYSNYYLMRDLGFTPEAIQGRSWAELAELVHPIDFANVTTLLQR
WDTVDDQQVLLAEYRLQDVHGNWRWFVSRDRVFERTPDGRVSQIIGTAEDITERKRVEQS
LRESEQRFRELADAIPQIVWVAALDGGLTYLNAKATEYTGVGMDQLTGWSWEQVIHPEDV
PNAIERWTATLEQELPRDIELRIRQTDGAYRWHISRQVPIRDASGAIVRWYGTCTDIDDL
KRTQAALQQSESTLEEAMRIGDMGSWIIDLVQNRATWSDEGFRLLGYVPGVDQPSQELFL
NGVYPADRDTVRHDLANAIATQTSLNSEFRFVRPDGQLRWLHSRARATSDQHGRPIQFVG
VTQDITARKQAELARLEVEERYRLAILATNDLIWDLDPVAGTVAWSEQYAATLGRTPESS
DSLQWWIDRIHPADRERTARSLSAAVDGTATYWTADYEFLRADGVWASIHDRAYIARDAA
GHARRVVGAMQDVTDRKRAETEVRRTAELLRAVAEGTSDAVFVKDRDGKYLLANQAACQF
MGKPLEQVLGRDDSEWFDAEGARLVLEVDREVMRSGLVRTSEETLTANYVTRTYLASKAP
YRDELGNVIGIIGISRDITARKEAERMLRLNQFSVDHAVDSIFWINASSEILYVNNAACR
TLGYTRDEMLGKTVPDIDPNFLPEAWPAHWEELRCRGSFTFESDHVTKDGRTLKTEVTVN
YLQYEGQEYNCAIMRDISERKQAELEMRQSLSRMRATLESTADGILVVDLEGRVLDYNRR
FISIWRFPEEMIAEANKSDIIASSDQHQAVQKMLAQLKDPEGFVRRVQEMYQNREESSFD
VLEFKDGRIVERFSQPQWMDGQPVGRVLSFRDVSEQRKLEEQLRQSQKMEAVGQFAGGIA
HDFNNLLTVINCYCELLLDQKSQPQNWRESVQHIRDEGLRAAQLTKQLLDFSRRSHFQPR
VIHLNDVIEGSQKLLRRLIGERIQLILHLDPLLPAIKADTTHLDQVLMNLVVNARDAMPA
GGRLTIRTSRLSPQDARQFLTNISLETPYVQLEVADTGIGMSADVQARIFEPFFTTKEIG
SGSGLGLAVVHGIMQQHDGQIHVTTEPGVGTTFRLLFPGVAEEPPSVTASKQPTIRHGAE
TILLVEDEPAVRKATRLMLELQGYRVLEAANGREALDLVRTLPDPIDLLITDVVMPGIGG
RELAGELRSMHADLPVVYISGYSESFGARGASLQPHEAFLQKPFTQADLLQQVYTSIVRA
L
NT seq
4686 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgaacttagatcgcgaggacgttcggaattcagccccctcgctgccactactc
gatttgctggccgccgtaagcgaagcgtcgctggatgcactgtttgtgaaagacagctcc
ggccggtacttgttttgcaatgccgctggaacaaagctcacgaatcggacacgcgagcaa
atcctcgatcaggatgataccgccgtattcggtagtgacacggcgcgcatcatgcgggcg
caggaccagcgagtcatgcaatcgggtcttccggcagcggagacgcatgtcgtccaaatc
ggagataatcttcgctcaatccagatgacgactaagccgtaccaggatcaacacggtacg
gtacaaggcgtgatcgtgattgcacgggactttgcggatgcagcgatggggaatcgttcg
cataccgttggtgtcgcggcagcgaaccatctcgagcgaagcggggcggaacaggcatta
cgggagagcgaacgccaattagcggacgcgcagcgcatcgcgcgcatcggtagttgggtg
tgggagccctcgtcaggcaaagtctggtggtcgcgcggcgtattcgcgttgtttggtgtc
gatccacaagtcgttcagcccagctttcaagcgttcctgcaactgctgcatcccgatgac
cttccgacggctgtcgcgcgggttgacgcgatgctcgcgggtgccgatcgctttgaagat
gatttgcgcatcatccgtcctgacgggcaaatgatctggctgcacagtcgggctgtcgcc
acgcgcgatgctgacggcaacattctccgtgtggaagggacggatcaggacatcactgcc
agaaaactcgccgcggcggaagtccaggccagccagaaattcgtgaaagccgtcgctgag
acatcccccctgacaatttacgtgttcgacctacagcagcagagtatcacttattcgaac
tattatctcatgcgggatctgggtttcaccccagaagcgatccaaggccggagttgggct
gaactggcggaactggtacatccgattgatttcgccaacgtgacgacgcttctccaacgc
tgggacaccgtcgacgatcaacaagtcctgctcgcggaatatcgcctgcaggatgtccat
ggcaactggcgttggttcgtcagccgggatcgggtttttgagagaacgcctgacggtcgg
gtcagccagatcatcggcacggccgaggatatcactgagcgcaagcgggtcgaacaatcg
ctccgggagagcgaacaacgattccgcgaattggccgatgccatcccgcaaatcgtttgg
gtcgcggcgttggatggcggcttgacgtacctgaacgccaaggcgacggagtacaccggc
gtcgggatggatcagctgacggggtggtcctgggagcaggtcattcatccggaggacgtg
ccgaacgcgattgagcgttggaccgcgactttggagcaagaacttcccagagacatcgag
ctccggatccgccagacggacggagcttaccgctggcatatcagtcgccaggttcccatc
cgagatgcgtcgggagccatcgtgaggtggtacggcacctgcaccgatatcgatgatttg
aagcggactcaagctgcgctgcagcagagcgagtcgactctcgaagaggccatgcggatc
ggcgacatggggagctggatcatcgacctggtgcagaatcgggccacctggtctgatgaa
ggcttccgactgctgggatatgttccgggagtggaccaaccttcccaggagctcttttta
aacggggtctacccagcagaccgtgataccgtgcgtcatgatctggcgaatgcgatcgcc
acgcagacttcgctcaattcggagtttcgctttgtccgacccgacggccagctacgctgg
ctccattccagggcccgcgccacctctgatcagcatgggcgacccatccaatttgtgggt
gttactcaggacatcaccgcccgcaaacaagccgaactggcgcgactcgaagtcgaagaa
cgctaccgcctggccatcctcgcgacaaatgatctgatctgggatctcgacccggtcgca
gggaccgttgcctggagcgagcaatacgcggccaccttaggacgaacgccagagtccagc
gattccttgcagtggtggatcgacaggatccatccggcagaccgggaacgtactgccagg
tcgttgagtgctgcggtggacgggaccgctacttattggactgccgattacgagttcctg
cgcgcggacggcgtctgggcctcaattcatgatcgagcgtacattgcgcgtgatgcagcg
ggacatgcgcgccgagtcgtgggggcgatgcaggatgtcaccgatcgcaaacgggctgaa
acggaggtgcggagaacagcggaattgctgcgagcggtcgcggaaggcacatcggatgcg
gtcttcgtcaaggaccgggatggcaaatatctcctcgcgaaccaggcggcttgccaattc
atgggcaagccgctcgagcaggttttaggaagagacgatagcgagtggtttgacgccgaa
ggtgcccgtctggtgttggaagtggatcgcgaagtcatgcggtcgggccttgttagaaca
tcggaagaaacgctgacggcgaattatgtgacacggacctatcttgcgtcgaaggctccg
tatcgcgacgaacttggaaatgtcattggaataatcggcatttctcgcgacatcacggcc
cgcaaggaagccgagcggatgttgcgtttaaatcaattcagcgtcgatcacgccgtggat
tccatcttttggatcaacgcttcgagtgagattctgtacgtcaacaatgccgcctgccgc
accttgggctacacgcgcgacgagatgctcggaaagacagtaccggacatcgatccgaat
tttctgccagaagcctggccggcccattgggaagaactgcggtgccgcgggtcattcacg
ttcgagtccgaccatgtgaccaaggacggccgcactttgaaaaccgaagtcaccgtcaac
tatctgcaatatgaaggccaggaatacaactgtgccatcatgcgtgacatctcggaacgc
aagcaggccgagttggagatgcggcagtctctgtcgcggatgcgggccaccttggaatcg
acggcggacggcattctcgtggttgacttggaaggccgcgtgctggattacaatcgccgc
ttcatctcaatctggagatttcctgaggagatgatcgccgaggcgaacaagtcggacatc
atcgcatcatccgaccaacatcaggccgttcagaagatgctcgctcaattgaaggacccg
gagggctttgtccgccgggtacaggagatgtaccagaaccgggaggaatcctccttcgat
gtgctggaattcaaggacggccgcatcgtcgaacggttttctcagccccaatggatggat
ggacaaccggtgggacgcgtgttgagctttcgcgacgtctcggaacagcgaaagctggaa
gagcagttgcggcagtcgcagaaaatggaagccgtggggcagttcgcgggaggcatcgcc
cacgatttcaataacctcctcacggtcataaactgctattgtgagctactactggatcag
aaatcgcagccgcagaattggcgggagtccgtgcagcacatccgcgacgaaggacttcgg
gccgcacaattgaccaagcaattgctggacttcagtcgccgctcgcatttccagccgaga
gtcattcacttgaatgatgtgatcgagggatcgcagaaactgctgcggcgattgatcggc
gaacgaatccaattgatcctgcatctcgatcctctcttgcctgcgatcaaggccgatact
actcatctagaccaggtgctgatgaacctcgtcgtcaatgcacgggatgccatgcccgcc
ggcggccggctgacgattcgcacgagcagactttcaccacaggacgctcgacaattctta
acgaacatttcattggagacgccctacgttcaactcgaagttgctgacactggcatcggg
atgagcgcagacgtccaagcccggatctttgaacccttttttacaacgaaggagatcgga
agtggttccggactggggctcgccgtcgtccacggcatcatgcaacagcacgatggccag
atccatgtgaccacagagccaggcgtcgggacgacttttcgattactgtttcccggtgtc
gctgaggaacctccgtcggtgacagccagcaaacaaccaaccatccgccatggggcggaa
acgattctgctcgttgaggacgaaccggcagtgagaaaagcgacgcggctgatgctcgaa
ttacagggttatcgcgtcttggaagctgcgaatggtcgagaggcgttagatctggtacga
acgctgcctgatccaatcgacttattaataaccgatgtcgtcatgccgggaatcggtggg
cgagaattagcgggagaattgcgatcgatgcatgccgatctcccggtggtttatatcagc
ggatattcagagagtttcggtgcccgcggagcatcattacagcctcatgaggcctttctc
caaaagccgtttactcaagcggatctactccaacaagtctatacatccatcgtacgggcc
ttgtga
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