Planctopirus limnophila: Plim_0214
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Entry
Plim_0214 CDS
T01225
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
plm
Planctopirus limnophila
Pathway
plm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Plim_0214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plm03021
]
Plim_0214
Transcription machinery [BR:
plm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Plim_0214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
FUSC
STX6_10_61_N
HetR_C
DUF349
Macoilin
DUF2959
Motif
Other DBs
NCBI-ProteinID:
ADG66066
UniProt:
D5SND9
LinkDB
All DBs
Position
276985..278637
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AA seq
550 aa
AA seq
DB search
MHRLDQGLHELIVRGKKQGFLTYSQINDYLPDEAMNPEKLDELLGSIWEEGLKIVTDDQV
GMIVEEKKKPRTRAKNGKEVVVEEKSKKIDDPVRMYLTQMGEIPLLTREKEISLAKTIEV
TRNQFREELLECDYALKMAFDTLSKVNSGELPFDRTIKVSVTESKEKNQILGRMPHNLKT
IENLRKQAIGDFEKSIDANASSDERKEAEKQHLKRRRKMVKLIEELSLRTQRLQPTMKRL
EQISRRMCDLQRQIDSLKHLKSARDERANIHKELHDLMMMTLETPEGLRQRVERVRERFA
KYEQAMRDLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFSTY
ATWWIRQAITRAIADQARTIRIPVHMIETMSKLRKVAKKLLQEMGREPTLEETAEAAGVS
LEETRRVMKISRHPISLDRPVGESEDSYFGDFIEDDNTESPVMAATQEMLKDKIDNVLKT
LTYREREIIKLRYGLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQLKGF
LDGLMIAVAK
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
gtgcatcgacttgatcaaggcctgcatgagttaattgttcgtgggaaaaagcagggcttt
ctgacgtattcacagatcaacgactatcttccggatgaagcgatgaatccggagaagctc
gacgagttgctgggatcgatctgggaagaaggtctcaagatcgttaccgatgaccaggtg
gggatgattgtcgaggagaagaagaagccgcggactcgtgccaagaacggcaaggaagtt
gtcgtcgaagaaaagtcgaagaagatcgacgaccccgtgagaatgtatctcactcagatg
ggtgagattcccctgctgactcgtgagaaggaaatctctctcgccaaaaccatcgaagtg
actcgcaatcagtttcgcgaagagcttctggaatgcgattacgcactgaagatggcattc
gatacgctctcgaaggtcaacagcggagaattgcctttcgatcgcaccattaaagtcagt
gtgaccgaatccaaagagaagaaccagattctggggcgcatgcctcacaacctgaagacg
attgaaaacctccgtaagcaggcgattggcgacttcgagaaatcgattgatgccaatgcc
tcttccgatgagcgtaaagaagctgaaaagcagcacctcaagcgtcgccgcaagatggtc
aagctgattgaagaactcagcctgcgaactcagcgtctacaacccaccatgaagcggctg
gagcagatctcccgccggatgtgcgacctgcagcgtcagattgacagcctcaagcacctg
aaaagtgctcgcgacgaacgtgccaatatccacaaggaattgcacgatctgatgatgatg
acgctcgaaacgcccgaaggacttcgtcagcgtgtcgaacgagttcgcgaacgctttgcc
aaatacgaacaggcaatgcgtgatctctcgggtggtaacctgcgactggttgtttcgatt
gccaagaagtaccgcaatcgtggtctctccttcctcgatctcattcaggaagggaacacc
ggcctgatgcgtgccgtcgataagtacgagtatcgccggggctacaaattcagtacttac
gcgacatggtggatccggcaggcgattacccgtgcgattgccgatcaggcccgcacgatt
cgtattcctgtccacatgatcgaaacgatgtccaagctccgtaaagtggccaaaaagctg
cttcaggagatgggccgcgaaccaaccctcgaagaaaccgctgaagccgctggtgtttct
ctcgaagagactcgccgcgttatgaagatttcgcgtcatccgatttcgctggatcgtccg
gtgggcgaaagcgaagacagctactttggtgatttcatcgaagacgacaacaccgaaagc
cctgtgatggccgccacacaggagatgctcaaggacaagattgataacgtcctcaagacg
ctcacttaccgtgagcgggaaattatcaagctgcgatacggtcttggtgacggctacacc
tacactcttgaagaagtcggccgcattttcaaagtcactcgtgaacgtgtccgccagatt
gaagccaaggctgttcgcaaattgcagcacccggtgcgcagcaaacaactaaagggtttc
ctcgatggcctgatgattgccgtcgccaaatag
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