Planctopirus limnophila: Plim_0245
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Entry
Plim_0245 CDS
T01225
Name
(GenBank) tRNA pseudouridine synthase D TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
plm
Planctopirus limnophila
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plm03016
]
Plim_0245
Enzymes [BR:
plm01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
Plim_0245
Transfer RNA biogenesis [BR:
plm03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Plim_0245
Prokaryotic type
Plim_0245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
ADG66097
UniProt:
D5SNU2
LinkDB
All DBs
Position
complement(315304..316470)
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AA seq
388 aa
AA seq
DB search
MTEQPVPLLAPSAWPELTSQTAGVGGVWKQSPEDFLVEEIPAYLPCGEGEHLFLWIEKRN
LSSEMLVAQLSKQLAVPRSEIGMAGLKDRQAITRQWVSVPTRAEKLVPAVESDDLQVLEA
RRHRNKLKTGHLKGNRFVAILRGVEPDLSKIDAITRQLQAQGCPNYFGMQRFGHQHSTWK
LGWQLLLGQISPQDIPAPRRKFLLRLALSAVQSGLFNEVLAQRLRDGLFSTVLCGDLMEI
LPAGAKFLVTDAAADQPRFDSWEISTTGPIFGVRMRSPGGEVHARELAILQKLVLTIEHF
QKFSSLMEGTRRPFRFLPAGLTCELLPANSSDHETPRGDLRVSVELPAGAYLTVLLHEFQ
KSPLEAAESPDSAGNSEDADEIASQSAD
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaacagccagtcccactgcttgctccctctgcctggccggagctgaccagtcaa
acggcaggggtgggcggtgtctggaaacaatcccccgaagattttcttgtcgaagaaatc
ccggcttaccttccctgcggagaaggtgagcatctgtttctctggatcgagaagcgaaat
ctttcgagtgaaatgctagtggcacagctctcgaaacagctcgccgttccccgctcagaa
attggcatggcggggttgaaagacaggcaggccattaccaggcaatgggtttctgtcccc
acccgggctgaaaagctggtaccagctgttgagagcgatgatttacaggtgctcgaagcc
agacgacatcgcaacaagctcaagacgggccacttaaaagggaatcgttttgtcgctatt
ttgaggggcgttgaacccgatctttccaaaatcgatgccattacccggcaactgcaggct
caaggctgcccaaattacttcggcatgcagcgatttgggcaccagcactcgacgtggaag
ctgggctggcaactgctgctgggccagatctcgccacaagatattcccgcccccaggcga
aagtttctgctccgactcgctctctctgctgtccaatccgggctgtttaacgaggtgctg
gctcagcgactgcgggacgggcttttctcgacagttctctgcggcgacctgatggaaatt
ctccccgctggtgcgaagtttctggtcacagatgccgctgctgatcagccgcgcttcgac
tcgtgggaaatctccaccaccggacccatttttggtgtgcgcatgcgttcgcctgggggc
gaagttcatgctcgcgaactggcgatcctgcagaagttagtattgacgatcgagcacttt
cagaaattctcctcgctgatggaaggaacccggcggcccttccgattcttgcctgcaggc
ctgacctgcgaattgttgcccgccaacagttcagatcacgaaacgcctcgcggtgacctc
cgcgtttccgtcgaactccctgctggtgcctatctaacggttctgctgcacgagtttcag
aagtcgcccctggaagcagcggagtctcccgattctgctggcaattccgaggatgccgac
gagatcgcctcacaatcggcagattaa
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