Planctopirus limnophila: Plim_0357
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Entry
Plim_0357 CDS
T01225
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
plm
Planctopirus limnophila
Pathway
plm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Plim_0357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plm03019
]
Plim_0357
03009 Ribosome biogenesis [BR:
plm03009
]
Plim_0357
Enzymes [BR:
plm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Plim_0357
Messenger RNA biogenesis [BR:
plm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Plim_0357
Ribosome biogenesis [BR:
plm03009
]
Prokaryotic type
rRNA processing factors
Plim_0357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
GerPC
Motif
Other DBs
NCBI-ProteinID:
ADG66208
UniProt:
D5SPH8
LinkDB
All DBs
Position
complement(443034..444647)
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AA seq
537 aa
AA seq
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MRKEMLMNVLQPEESRIAILEDGVLEELYVERNSLENYVGNIYKGRIVNIEPSIQAAFVD
FGVGRNGFLHVSDVEYQYYKHLVDGPDESFDDDDDEEDEKPRGRPRAPRGLDRTSRGKPP
IQEIFRRGSEVLIQVIKEGIGNKGPTLSTYISIPGRYLVLMPGLQRVGVSRKIGDDSIRR
RLRQQLKELSPPEGLGFIIRTAGIDRSQKDLQRDMNYLLRLWNVIVKRIRKFPAPVDIYE
ESDMMIRTIRDIYNSEIENIWIDEPRAYERAKEFMKIVLPRAVDRVQLYDGKEPLFHKHG
VEEEIARIQRRHVPLKGGGSIVIDQTEALVAIDVNSGSFRQDENAEENAYQMNLRAAEEI
ARQIRLRDLGGVIVNDFIDMREERHRRGVERALADAVARDRARTKILRTSPFGLVEMTRQ
RIRPSLRRSVYEDCPCCAGTGQVKTAESMAIEVMRLLMFHANHQEVTRIVVDVQERVGAY
LNNKKRREISQLEEQYEVAISINSLSNVTPEHLRFFCTSESGTEIRFSSPEDSKARR
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaagaaatgctgatgaacgtcctccagccggaggaaagccgaattgccattctc
gaagatggcgttctcgaagagttatatgttgagcgtaacagtctcgagaactatgtcggc
aacatctataagggccggattgttaatatcgagcccagtattcaagcggcctttgttgat
tttggcgttggccgcaatggcttcctccacgtcagcgatgttgagtaccagtactataag
catctggtcgacggtcccgacgaaagcttcgatgacgatgacgacgaagaggatgaaaag
cctcgtggtcgtccgcgggctccacgtggactggatcggacatcccgcggcaagcctccc
atccaggagatctttcgccggggcagtgaagtccttattcaagtcattaaagaagggatt
ggcaacaaaggcccaaccctttcgacttacatcagtatccccgggcgatacctggtcttg
atgcccggtttgcagcgtgtgggagtcagtcgcaaaattggtgatgactcgattcgacgc
cgattgcgccagcagcttaaagaattgagccctccggagggccttggatttatcattcgc
acagcagggattgatcgctcgcagaaagacctgcagcgcgacatgaactatctgctgcga
ttgtggaacgtgatcgtcaagcgaattcggaaattccccgctcccgtggatatctacgag
gagagcgacatgatgatccgcacgattcgcgacatctacaacagcgaaattgagaatatc
tggatcgatgaacctcgggcctatgaacgggccaaagagttcatgaagatcgtcttgccc
cgagctgtcgatcgagtgcagctctacgacggtaaagagccgctcttccataagcatggt
gtcgaagaagaaattgcccgcattcagcggcgtcacgttccgcttaaaggtggcggatcg
attgtcatcgatcagacggaagcactggtggccatcgacgtcaacagcggcagcttccgt
caggatgaaaatgccgaggaaaacgcttaccagatgaatctgcgcgcagccgaagaaatc
gcccggcagattcgtctccgcgatttgggtggcgtgatcgttaacgacttcatcgatatg
cgtgaagaacgtcatcgccggggtgttgagcgagcattggctgatgccgtggcccgcgat
cgtgcccgtaccaagattctcaggaccagcccctttggtcttgtggaaatgacaaggcag
cggattcgcccttcgcttcgccgcagtgtctacgaagactgcccctgctgtgccggaact
ggtcaggtcaagactgccgaaagcatggcgattgaggtcatgcggctactcatgttccat
gccaaccatcaggaagtgacgagaattgtcgtcgatgttcaggaacgcgtgggagcttac
ctgaacaacaaaaagcgacgagaaatcagccaactcgaagagcagtatgaagttgcgatc
agcatcaactcactctcgaatgtgacacctgaacatttgcgattcttctgtacgagtgaa
tcgggaaccgagattcgcttttcttccccggaagactcgaaagcgcgtcgctag
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