Planctopirus limnophila: Plim_0380
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Entry
Plim_0380 CDS
T01225
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
plm
Planctopirus limnophila
Pathway
plm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Plim_0380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plm03019
]
Plim_0380
03016 Transfer RNA biogenesis [BR:
plm03016
]
Plim_0380
Enzymes [BR:
plm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Plim_0380
Messenger RNA biogenesis [BR:
plm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Plim_0380
Transfer RNA biogenesis [BR:
plm03016
]
Prokaryotic type
tRNA degradation factors
Plim_0380
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
OB_PDCD11
S1_RRP5
KH_2
KH_KhpA-B
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
ADG66231
UniProt:
D5SPK1
LinkDB
All DBs
Position
473382..475493
Genome browser
AA seq
703 aa
AA seq
DB search
MKVTVERQFAGRTLSITTGELAKQAAGAVTIQYGETMVFVAAQNGPSRPGTDFFPLTCDY
RERLAAAGKFPGGFIKREGRPTLREVLTSRLTDRPIRPLFPEGYIEEVQVMSNVLASDGV
NDPDVLSIIGASAALCLAPVPFQGPLAAVRVGLIDGEFILFPTQEQIADSELDLVVAGTE
KSVLMIEGFGKQLPEDQMADAIMFGHRTIVELCQLQLELVAKSGRERFVLPAPEANPFEA
ILLEKAYAKLREVKQSSVKKERSSQTSAYKKELLAEFFPNDAETTAAGLTKAQFFAAFYA
VETKAVRDLILDGVRLDGRKHDDLRAVSCAASVLPRVHGSSLFTRGETQSLATVTLGTIR
DVQRVEGLFGEEAKAFMLDYYFPPYSVGECKPLRGPGRRELGHGALAERSVASVLPSPEK
FPYTIRVISDILESNGSSSMASVCSATLALMDAGVPISQPVAGISIGLVKSADRFILLTD
IMGDEDHFGDMDFKVAGTQKGVTGIQLDLKIDGISEEIVRATLEQAKKARIELLKTMLSA
IRRPRSEISTHAPRLLRTKIDPSKIGLLIGPGGKNIRAIQEQTGATIDIEDDGTVVIASS
SSVGAEDALARVEAIAEEIKVGRVYNGTVSSIKDFGAFIEIAPGKDGLCHISELSDGFVK
NVNEVVQVGEKIQVKVIAIDEQNRVKLSRKAVLADEAEKPAAE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttaccgtagagcgtcagtttgcaggtcgcaccttatccatcaccaccggcgag
ttagccaagcaggctgctggcgctgtgacaattcaatatggcgaaacaatggttttcgtc
gctgctcagaatggcccttcccgcccgggaaccgatttcttcccgctgacatgcgactat
cgggagcgtctggctgccgctgggaagtttcctggtggattcatcaagcgagaaggtcgc
cccacacttcgcgaagtgctgacgagtcgcctgactgaccgtcccattcgaccactcttc
cccgaagggtatattgaagaagtgcaggtcatgtcgaacgtgctcgcctcagatggcgtg
aacgatcccgatgtgttgtcgattattggtgccagtgccgcgctttgcctggctccggtt
cctttccagggaccactggccgctgtgcgggtgggcttgatcgatggcgaattcatcctc
ttcccgactcaggaacagattgccgattccgaactggatctggtggtagccggtactgag
aagtccgtgctgatgattgaaggcttcggtaagcaacttcccgaagatcagatggccgat
gccattatgttcgggcaccggaccattgtcgaattgtgccagttgcagctggaactggtt
gcgaagtccggccgcgaacgatttgtgctccctgctcccgaagccaatccttttgaagcg
attctgctcgaaaaggcttatgccaaactgcgtgaagtcaagcagtcgagcgtcaagaaa
gagcgtagcagccagacatcggcctacaagaaagaacttcttgccgaattctttcccaat
gatgctgaaacgaccgccgctgggctgacgaaagcacagttcttcgccgccttttatgca
gttgaaaccaaggcagttcgcgacttgattcttgatggcgtacgtctggatggacggaag
cacgacgatctccgcgctgttagttgtgcggccagtgtcttgccacgagttcacggctct
tcactcttcacacggggtgaaactcaatcgctggcaaccgtgacattgggaacgattcgc
gatgtccagcgcgtggaagggctctttggcgaagaagccaaagcctttatgctcgactac
tacttccctccttactctgtgggtgaatgcaagcctttgcgtggccctggtcgtcgcgaa
ttgggtcatggggccttggctgaacgatccgttgccagcgttctgccctcgccggaaaag
ttcccctatacgatacgagtcatctcggacattctcgaatcgaacggatcgagttcgatg
gcttcagtctgcagtgcaacactggcactgatggacgccggtgtgcccatcagccagcca
gtggctgggatttcgattggacttgtgaagtcggctgaccggttcattctcctcacagac
atcatgggtgatgaagatcactttggtgatatggacttcaaggtggccggtactcaaaag
ggcgtgactggcatccagctcgacctgaagatcgatggcatcagcgaagaaatcgtgcgg
gccacactcgagcaggccaagaaagcccgtatcgaactgctcaagacgatgctcagtgcc
attcgtcggcctcgctccgagatttcgacacacgcaccgagactgcttcgtaccaagatc
gaccccagcaagatcggcctgctgattggtcccggtggcaagaatattcgagccattcag
gaacagaccggtgcgacaatcgatatcgaagatgatggaactgtggtgatcgccagcagt
tcgagcgtgggtgccgaagacgcactggcccgagtcgaagcgatcgctgaagagatcaag
gtcggccgggtctataacgggacggtcagctcgatcaaggatttcggtgcctttatcgaa
atcgctccgggcaaagatgggctctgccacatcagcgaactctcggacggcttcgtgaag
aatgtgaacgaagttgtccaggtgggcgagaagattcaggtgaaagtcatcgccatcgac
gaacagaaccgtgtcaagctttcgcggaaggctgtattggctgatgaagccgagaagcca
gccgctgagtaa
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