Planctopirus limnophila: Plim_0381
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Entry
Plim_0381 CDS
T01225
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family
KO
K03086
RNA polymerase primary sigma factor
Organism
plm
Planctopirus limnophila
Pathway
plm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Plim_0381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plm03021
]
Plim_0381
Transcription machinery [BR:
plm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Plim_0381
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
HTH_17
HTH_23
HTH_Tnp_ISL3
Mor
HTH_38
MerR_1
MerR
AbiEi_4
KORA
HTH_29
Motif
Other DBs
NCBI-ProteinID:
ADG66232
UniProt:
D5SPK2
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All DBs
Position
complement(475774..477450)
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AA seq
558 aa
AA seq
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MKGPIMSNYRHPALRLLAEQQMRYSPRDVRLQQLERAERLAHRVDPQIEYPWQKVCQEVT
SYRPESYPDLLITGSDLLHDLRVFIEDLSESIELRPEQMTEDVLTVEDVSRQYNVSTKTV
DRWRDRGLISRKFLFGGRKRVAFLRSSVDQFVEANHEDIGRVGNFRHVTDDERRMILGRA
RRLARFGAGPTEINRRLARKFHRSPETIRLMLKDFDREQPEIALFPDDSDVLSLTEREAV
YEAYHQGVAVEDLATKFKRTKSSLYRTIAEVRARHLLSRSIDYMDAPEFHREAAKAIESE
EPPAVIDQGVTKPPPGLPPYLASLYATPLLTREQEHHYFRKMNYLKFAAENLRKTISLAQ
PRVKLMDEIESLLARSTEIKNFLIRSNLRLVVSIAKKHSHPTANFFEMISDGNMSLIKAI
EKFDYTRGFKFSTYASWAIMKNFARSIPAENTRLDRFRTGSEEVFVQSMDPRTDQFRDEI
VNYRQREALMGILGQLELRERDIIMHRYGLETGQQPQTLEQVGHRLGVTKERIRQIEARA
LKKLKRIATDERLDIPGI
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgaaagggccgatcatgtcgaattaccgccatccggccttgagacttctggccgaacag
cagatgcgctattcacctcgcgatgtccgcctgcagcagcttgagcgtgctgaacggctg
gctcatcgtgtcgatccgcagattgaatatccgtggcagaaagtctgtcaggaagtgact
tcgtatcgacctgagtcatacccggatctgctcatcaccgggtccgatctgctgcatgat
ctgcgggtcttcattgaagacctgtcggagtcgattgaactacgcccagagcagatgact
gaagatgtactgaccgtcgaagatgtcagccgacagtacaacgtcagcacaaaaaccgtt
gaccgctggcgggatcgtggcttgatcagtcgcaaattcctctttggtggtcgtaagcga
gtggcctttctcaggtcatcggtggatcaatttgtggaggccaatcacgaagacatcggc
cgtgtggggaattttcgccatgtcacggacgatgaacgacggatgattctcggtcgtgcc
aggcgtttggcacgctttggtgccggcccgacagaaatcaatcgtcggctggccaggaag
tttcatcgttctcccgaaacgattcgactgatgttgaaagattttgatcgagaacagccc
gagattgcattgttccccgatgactccgatgtgctttcgctgaccgagcgcgaagcagtt
tacgaggcctaccaccagggtgtggccgtcgaagatctcgcgaccaagttcaagcgaacc
aagtcgagtctttatcgaacgattgccgaagtgagagcccggcatctcctgagtcgctcg
atcgattacatggatgcgcccgagttccatcgggaagccgctaaagccattgagtctgaa
gaaccgcccgctgttatcgatcagggagtaactaagccaccacccggtttgcctccttat
ctggcgagcttgtatgccactccactgctgaccagggagcaggagcatcattacttccgc
aaaatgaactacctgaagtttgccgcggaaaatctgcgcaaaacgatttcgttagcgcag
cctcgcgtgaagctcatggatgaaattgaatcgctgctcgccagatcaaccgagatcaag
aacttcctgattcgcagtaatttgcgattggtcgtgtcgattgccaaaaagcattcgcat
ccgacagccaacttttttgagatgatcagtgatgggaatatgtctctcatcaaggcgatt
gaaaaatttgattacacacgcggctttaagttctccacttacgcctcgtgggccatcatg
aagaacttcgccagatcgattcctgctgagaacactcggctcgatcgcttccgcacaggg
agcgaagaagtctttgtgcagtccatggatccgcgcaccgatcagttccgagacgaaatc
gtgaactatcgtcagcgggaagccctcatggggattctcggacaactcgaattgcgagaa
cgcgatatcatcatgcatcgctatggcctggaaactggccagcaaccgcaaactctcgaa
caggtcgggcatcgtttaggtgtcacgaaagaacgaattcgacaaatcgaagcccgcgct
ttgaagaagttgaagcgtattgccactgacgaacgtctcgatattcccgggatctaa
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