Planctopirus limnophila: Plim_0472
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Entry
Plim_0472 CDS
T01225
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
plm
Planctopirus limnophila
Pathway
plm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
plm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Plim_0472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plm03021
]
Plim_0472
03400 DNA repair and recombination proteins [BR:
plm03400
]
Plim_0472
Enzymes [BR:
plm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Plim_0472
Transcription machinery [BR:
plm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Plim_0472
DNA repair and recombination proteins [BR:
plm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Plim_0472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ADG66321
UniProt:
D5SQ69
LinkDB
All DBs
Position
597053..601336
Genome browser
AA seq
1427 aa
AA seq
DB search
MSTGETSYDRVNEFSSIKINLASPHDIRSWSFGEVKKPETINYRTYRPERDGLFCERIFG
PEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPVVHIWFFKSMPSR
LGALLSVKTTSLEKVIYFQDYLVIDPGDTTLKRGQLLTEEEYRQAKTKFGEGSFDADMGA
DAIKKMLLDLNLVEISQQLRVELKKTNSQQKKKELIKRLKIVESLRDSDNRPEWMVLDCV
PVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLVDLNAPEVIVRNEKRMLQQS
VDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPTLK
LHQCGLPKKIALELYQPFIIRRLKELGHADTIKSAKRMLERRDEEVWDILEEVITNHPVL
LNRAPTLHRIGIQAFEPQLVEGNAIRIHPLVCRGFNADFDGDQMAVHLPLSIEAQVEAHT
LMMSTHNIFSPSNGAPIISPSQDIVMGCYYVTMKKPGLIGDGMTFSSTQEVYTAFQHGKV
RLHTSIRVRLPKDKRVKGEGADTYKKGGLVETSVGRVVFNDMISPKMAFYNYTMKGRDLA
GVISDCYLEMGRRETIALLDRMKETGFRESTRSGLSFAASDLKTPPNKDKVISEAEAHVL
KFQKNYEKGVITAKERYEQTLDRWTQAREAITVSMMDEFKNDVRDEGRYVNPIFLMADSG
ARGGVEQIRQLAGMRGLMAKPSGEIIETPIKANFREGLTVLEYFSSTHGARKGLADTALK
TADSGYLTRKLADICQNLVITMRDCGTTKGITRGVIYRGEKVEVGLADAIRGRVSRTNIV
NPVTDEVVVREDELITIEIARKIEAMGLEKIQVRSPMTCEAGLGICQLCYGMDLSTGALV
EEGLAVGTIAAQSIGEPGTQLTMRTFHVGGTASRDVEDSEIKCRKGGRVRFARVRSVVNA
DGKAVVLGRNGEVTVVDSKDRELEKYTIPNGATLQVAENEVIEAGQILCSWDPHSVPILC
EVGGKVRFEDLIEGQTVRSETDRMGNIRKTIIEHKGDRHPQIVLEDSAGKILDFYYLPER
ATVEVLEGQQVAAGSILAKNPRESMGTQDITGGLPRVTELFEARKPKEPAIISEIDGEVE
LVAEKKRGKRIIKVKGVDGTEREHIIPHGKQLLVHSGEQVKAGDALVRGPLVPHDILAVS
GEEAVHAYLLHEIQNVYRSQRVVIDDKHIELVVAQMLRKVRVDDVGDTTLLPGVLIDRFE
FRKINQKLQQCGRVTDPGDSEFHKDDIVPLETIAQVNEEIEASGGQPIATAKPRPASAST
QLLGITKAAVQSESFLSAASFQETTKVLTEAAIAGKSDYLVGLKENVILGHLIPAGTGFK
LHQKSEVRIRPEALAELTAERDRILAARANLLNEPEISPNSGLGRLE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaccggcgaaacatcgtacgatcgcgtcaatgagttttcctcgattaagatcaat
ctggccagccctcacgatatccggagctggtccttcggtgaggtgaaaaagccggagact
atcaactaccgaacatatcgtcccgagagggatggtttgttctgtgagcgtattttcggt
ccagaaaaagactgggaatgcgcctgcggtaagtaccgcggcatgaagtacaaggggatg
atctgcgaccgttgcggcgttaaagtcacgcatagtcgtgttcgccgtaagcgcatgggg
cacattgagttagctgccccggtcgtgcatatctggttcttcaagagtatgcccagtcgc
ctgggcgctctgctgagtgtgaagacgacgtcactggagaaagtgatctacttccaggac
tacctggtgattgatccgggtgacacgactctgaagaggggtcagttgctcacagaagaa
gaatatcgtcaggccaaaaccaagttcggcgaaggcagcttcgacgccgacatgggtgcg
gatgctatcaagaagatgctgctcgatctgaatctcgtcgagatttctcagcagcttcgc
gttgagctcaagaagacgaacagccagcagaagaaaaaagagctgatcaagcgtctgaag
attgtggagtccctccgcgacagcgataaccgccctgagtggatggtgctcgactgtgtg
ccagtgattccacctgatctgcggccactggtgctgctcgattctggcaacttcgcgacg
agcgatctgaacgacctctaccgccgcattatcaatcgaaacaatcggttgaaaaaactg
gtcgatttgaatgctcctgaagtcatcgtgcgcaacgagaagcgcatgttgcagcagtcg
gtcgatgcgttgtttgataacaatcgctgcaagcggccagtgcttggctcgtcgaatcgt
ccgctcaaatccttgacagatatgatcaaggggaagcagggtcgtttccgcgagaacctg
ttgggtaagcgcgttgactattcggctcgttcggtgattgtcgtcggtccaaccctgaag
ctgcaccagtgtggtttgccgaagaagattgctcttgagctctatcagcccttcatcatc
cgtcgcctcaaggaactcggccatgccgataccattaagtcggctaagcggatgctggag
cgtcgcgacgaagaggtgtgggatattcttgaagaggtgatcacgaatcacccggtgttg
ctcaaccgcgcacccacgctgcaccgaattggtattcaggcgtttgaaccacaactggtg
gaagggaatgcgattcgtattcacccgctggtttgccgtggttttaacgctgactttgac
ggtgaccagatggccgtccacctgccgctctcgattgaggcacaggttgaggctcatacg
ctgatgatgtcgacacacaacatcttcagcccgtcgaacggggcgccgatcatcagtccg
tcacaggacattgtgatgggttgctactatgtgacgatgaagaagccaggcctgattggc
gacggcatgacattctcttcgacgcaggaagtctacacagccttccagcatggcaaggtg
cgcctgcatacttcgatccgcgttcgcctgccgaaagacaagcgagtgaagggagaaggg
gctgacacctacaagaagggtggcctggttgagacgagcgtcgggcgagtggtctttaac
gatatgatctcgccaaagatggctttctataactacaccatgaaaggtcgcgacctggca
ggtgtgatttccgactgctatctcgaaatgggtcgtcgcgaaacgattgctctgctggat
cgcatgaaggaaactggtttccgcgaatcaactcgctcgggcctttcttttgccgccagc
gatctgaagacaccacccaataaggacaaggtgatttcggaagccgaagctcacgttctc
aagttccagaagaactatgagaagggtgtgattacggcgaaagagcgctatgaacagacg
ctggaccgctggactcaggctcgcgaagcgatcaccgtttctatgatggacgagttcaag
aacgacgttcgcgatgaaggtcgttatgtgaatccgatcttcctcatggcagattcgggt
gcacgcggtggcgtcgaacagattcggcagttggccggtatgcgtggtttgatggctaag
ccaagtggcgaaatcatcgaaacaccgattaaggccaacttccgcgaaggcctgacagtg
ctggagtatttcagctcgacacacggtgctcgtaaaggtctggctgatactgcactcaag
acagccgattcgggatacctgactcgtaagctggcggatatctgtcagaacctcgtcatc
accatgcgtgattgcggcaccaccaaggggattacccgcggtgtgatttaccgtggcgag
aaggtcgaagtcggtctcgctgacgccattcgtggacgagtcagccggacgaatatcgtc
aatcctgtgacagatgaagtggttgttcgtgaggatgaactgatcacaatcgagattgcc
cgcaagattgaggcgatgggcctggagaaaatccaggtgcgcagccccatgacctgtgag
gcaggcctcgggatctgtcagctttgctatgggatggatctctccacaggtgcactggtt
gaagaaggtctggcagtcggaacgattgctgcccagtcgattggtgagcctggaacccag
ttgacgatgcgtaccttccacgtgggtggaacggcatctcgtgacgtggaagacagcgaa
atcaagtgccgcaagggtggtcgagttcgctttgcccgcgttcgcagcgttgtcaatgcg
gatggtaaagccgtggtgctggggcgcaatggtgaagtcaccgttgtggacagcaaagat
cgtgaactcgagaagtacacgattccgaacggggcgactctgcaggttgccgaaaacgaa
gtcattgaagcgggccagattctctgctcgtgggatcctcactcagtaccgatcctctgc
gaagtgggtggtaaggtgcggttcgaagatttgatcgagggtcagactgttcgctctgaa
accgatcgcatgggtaacattcgtaagacgatcatcgaacataagggtgatcgtcatccg
cagattgtgctggaagacagtgctggtaaaattctggacttctactacctgcctgaaagg
gcgacagtggaagttctcgaaggccagcaagtggccgccggttcgattctggcgaagaac
ccccgcgaatcgatgggtacgcaggacatcaccggtggtctgccccgagttactgaacta
ttcgaagcccgtaagcctaaagaacctgccattatctctgagattgatggcgaagtagaa
ctggtggctgagaagaaacgcggcaagcgaatcatcaaggtcaagggtgttgacgggacc
gaacgtgaacacattattccccatggtaagcaactgctggttcactcaggtgagcaggtg
aaagccggggatgcccttgttcgcggaccactggtgcctcacgacattctggcagtcagt
ggcgaagaagcagtccatgcctatttgctgcatgaaatccagaacgtataccgctcacag
cgtgtggtcatcgacgacaagcacattgaattggtcgttgcccagatgctgcgaaaggtt
cgtgtggatgatgtcggtgatacgacattgctgccaggcgtgctgattgaccggtttgaa
ttccgcaagattaatcagaagcttcagcagtgtggccgagtgaccgatcctggtgactca
gaattccataaggacgacattgtcccgctggaaacgattgctcaagtgaacgaagaaatt
gaagcttccggcgggcagccgattgcgacggccaagccacgaccagcgtctgccagtaca
caattgctggggattacgaaggccgctgtgcagagcgaaagcttcctgtcggcagccagt
ttccaggaaacgaccaaggtgctcacggaggctgccatcgccggtaagtccgattacctt
gtgggtttgaaggaaaacgtgattcttggccacctgattcccgcaggaactggcttcaag
cttcatcagaagtctgaggttcgaattcggccggaagctctcgcggagttgactgccgaa
agagacaggattctggccgcccgggcaaacttgctcaacgaaccagagatttcgcccaac
agtgggctggggcgtctcgaataa
DBGET
integrated database retrieval system
